Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

 Score =  310 bits (794), Expect = 3e-89
 Identities = 160/302 (52%), Positives = 211/302 (69%), Gaps = 2/302 (0%)

Query: 31  IKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQL 90
           IKFSHV   +  PKG  A   ++ V E + G+  + VFPNS L+ D+  L ALL  DVQ 
Sbjct: 36  IKFSHVV-AENTPKGQMALKFKQLVEERLPGEYQVNVFPNSQLFGDNNELSALLLNDVQF 94

Query: 91  AAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLEFWHNG 150
            APSLSKFE++TKK ++FDLPFLF+D+DAV+RFQ S  G++L N+M R+GV GL + HNG
Sbjct: 95  VAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQSDAGQQLLNSMKRKGVVGLGYLHNG 154

Query: 151 MKQISANKPILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQ 210
           MKQ SA+ P+++P DA+G KFR+ ASDVL AQF+ + A P K  F+E +  LQT+ IDGQ
Sbjct: 155 MKQFSASSPLVLPEDAQGKKFRIMASDVLAAQFQAVEAIPVKKPFSEVFTLLQTRAIDGQ 214

Query: 211 ENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIER 270
           ENTWSNIY +K++EVQ   TE+NHG+LDY+VVTS+ +W  LPAD R      L+E     
Sbjct: 215 ENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTSNTFWKSLPADKRKVIKASLDEAIAYG 274

Query: 271 NAESNKVEELNKQYIIEA-GGVVRTLTPEQRQQWVDALKPVWQKFEKDIGADLIEAALAA 329
           N  +      +KQ II++    V  LTPEQR  WV+A+KPVW +FE  IG DLI+AA+A+
Sbjct: 275 NEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAWVNAMKPVWAQFEDKIGKDLIDAAVAS 334

Query: 330 NQ 331
           N+
Sbjct: 335 NE 336