Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  260 bits (665), Expect = 5e-74
 Identities = 145/448 (32%), Positives = 252/448 (56%), Gaps = 28/448 (6%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M + +    ++G M +G+PIA +L + S+  + +        +AQ L N  A  + L+A+
Sbjct: 1   MTLVIFLGSLVGSMALGMPIAFALLVVSVALMFYLDLFDAQIIAQNLLNG-ADSFPLMAV 59

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFF+LA   M+ GG++KRI+  A+A+VG  RGGL   +++A  + A+LSGS+ A   A+ 
Sbjct: 60  PFFMLAGEIMNVGGLSKRIVNIAMALVGHKRGGLGYVAIIASCLLASLSGSAVADAAALA 119

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           ++++  MV  G+++  +AG+I     +  +IPPSI  +V+  A+ VS+ ++FL G+VPGL
Sbjct: 120 ALLVPMMVLAGHNRGRSAGLIAAGSIIAPVIPPSIGFIVFGVASGVSISKLFLAGIVPGL 179

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           + G  L +A +  +R +N+   P     E L+   + SW + L +II+ G+  GIFTPTE
Sbjct: 180 MLGASLAVAWWYISRSENVETPPKRSRAEVLRTLLDGSWAMGLPLIIILGLKFGIFTPTE 239

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
           AA VAAVYS F++  IYR+M              KV + +        +  + K T ++M
Sbjct: 240 AAVVAAVYSLFVSLVIYREM--------------KVSQLY------EVILSSAKTTSVVM 279

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
            ++A A++   ++T   +P  + E +          L+V+  ++++ G  M+ +  ++I+
Sbjct: 280 LLVAAAMVSSWLVTIADLPGQLAEMLAPFMDNQTLLLLVMMTLIILVGTVMDMTPTILIL 339

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420
            P++ P  I  GIDP++ G++ ++N  IG+ITPPVG  L V  GVAK+    +V+   P+
Sbjct: 340 TPVLMPAVIQAGIDPVYFGVLFLINTAIGLITPPVGTVLNVVCGVAKLDFEEIVRGVWPF 399

Query: 421 VGVMFLFLIIVTYVPWVSTWLPTLLMGP 448
           +   F+ L ++          P L++GP
Sbjct: 400 MFAQFVVLFLLVL-------FPQLVLGP 420