Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score =  507 bits (1306), Expect = e-148
 Identities = 262/445 (58%), Positives = 334/445 (75%), Gaps = 21/445 (4%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M +  LF  +  +M +GVP+A+SLGL+  L ++  S  S+ S+A  LF   + HYTLLAI
Sbjct: 1   MTILFLFAALFVLMFIGVPVAVSLGLAGSLTIMIFSQDSVRSLAIKLFET-SEHYTLLAI 59

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFF+LA  FM+TGGVA+R+I FA A VG  RGGLAI +V+ACM+FAALSGSSPATV A+G
Sbjct: 60  PFFLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVG 119

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SI IAGMV++GY + F AG++CNAGTLGILIPPS+VMVVY+AAT  SVG++F+ GVVPG+
Sbjct: 120 SIAIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGVVPGI 179

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           L G  L+IAIYI A  KNLP  P   ++E L AA++A WGLLL+VIILGGIY G+FTPTE
Sbjct: 180 LLGGALMIAIYIIAVKKNLPALPRASFREWLSAARKAIWGLLLMVIILGGIYSGMFTPTE 239

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
           AAAVAAVYS F+A F+Y+D+                      +D    L ++GKL+IMLM
Sbjct: 240 AAAVAAVYSAFVALFVYKDIS--------------------LRDCPKVLLESGKLSIMLM 279

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
           FIIANA++  HVLT E+IPQ IT  ++ AGL P  FL+VVN++LL+ G FMEPS +++I+
Sbjct: 280 FIIANAMLFAHVLTTEQIPQAITAWVIEAGLQPWMFLLVVNIVLLIAGAFMEPSAIILIL 339

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420
           AP++FPIAI LGIDPIHLGI+MVVNMEIG+ITPPVGLNLFV S V  M +  V++A LPW
Sbjct: 340 APILFPIAIQLGIDPIHLGIIMVVNMEIGLITPPVGLNLFVASAVTGMPVTQVIRAVLPW 399

Query: 421 VGVMFLFLIIVTYVPWVSTWLPTLL 445
           + +M  FL+I+TYVP +S  LP +L
Sbjct: 400 LALMLSFLVIITYVPSISLALPNML 424