Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score =  196 bits (497), Expect = 2e-54
 Identities = 134/463 (28%), Positives = 224/463 (48%), Gaps = 44/463 (9%)

Query: 3   VALLFILVIGMMIVGVPIAISLGLSSILF------LLWHSDASL-------ASVAQTLFN 49
           V  +F   +G++++G P+A SL    +LF      L+ H DA+L         V      
Sbjct: 8   VIAMFASFMGLLLLGFPVAWSLAGIGLLFAVLGYVLVEHFDANLWFTWDGTIGVLDARIY 67

Query: 50  AFAGHYTLLAIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALS 109
               +  ++A+P FI     +   G+A+R++   + ++G  RGG A+  VV  ++ AA +
Sbjct: 68  GIVANELMVALPLFIFMGIMLDRSGIAERLMHSLVRVLGPLRGGYAVTVVVVGILLAAST 127

Query: 110 GSSPATVVAIGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYS---AATNV 166
           G   A+V  +G + I  M++  Y+K  A G  C+ GTLGILIPPSI++V+ +     +  
Sbjct: 128 GIVGASVALLGMLSIGPMLQANYNKSLAVGTACSVGTLGILIPPSIMLVLMADRLGTSEA 187

Query: 167 SVGRMFLGGVVPGLLAGLMLIIAIYITARI-KNLPKQPFVGWKEALKAAKEASWG----L 221
           SVG++F+G ++PG++  LM I+ I I A + K+    P    K   +A  +  W     L
Sbjct: 188 SVGKLFMGALIPGMMLALMYILYIVIVAWLKKDFAPAPVNRPKLDARALLDVFWAVVPPL 247

Query: 222 LLVVIILGGIYGGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFV 281
            L+  +LG I+ GI T TEA+AV A  +  +A          A +    PVL        
Sbjct: 248 ALIFAVLGSIFFGIATTTEASAVGAFGALLMA---------AASRRLNLPVL-------- 290

Query: 282 HKDTKATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVN 341
               K  LY   +    +  I   A +   VL       +I  ++     G    L+ V 
Sbjct: 291 ----KDALYQTSRTAAFIFGIFIGATVFAAVLRGLGGDDVIRAALTGLPFGQTGVLLTVL 346

Query: 342 LILLVGGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFV 401
            I  + G F++   + +I+ PLV P+  ++G+DP+   I+  + ++   +TPPVG  LF 
Sbjct: 347 AITFLLGFFLDWVEITLIILPLVAPVLFSMGVDPLWFAILFALCLQTSFLTPPVGFALFY 406

Query: 402 TSGVAK--MSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLP 442
             GV    ++  +V    LP++ +  + L +V Y   ++TWLP
Sbjct: 407 IKGVCPPGITTRDVYLGVLPYIVIQLIGLALVFYFAPLATWLP 449