Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., alpha-ketoglutarate TRAP transporter, large permease component (from data) from Shewanella amazonensis SB2B

 Score =  508 bits (1307), Expect = e-148
 Identities = 262/459 (57%), Positives = 347/459 (75%), Gaps = 14/459 (3%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M +A LF+ +   M++G+PIAI+LG SS+L +L  S+ SLASVA  L+ A + HYTLLAI
Sbjct: 1   MTIATLFLTLFLCMLLGMPIAIALGFSSMLTILLFSNDSLASVALKLYEATSEHYTLLAI 60

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFIL+S F+STGGVA+RII FA+  VG  RGGLA+ASV+ACM+FAA+SGSSPATV AIG
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SIVI GMV+ GY ++FAAGVI  +GTLGILIPPSIVM+VY+AAT VS  RMF+ G++PGL
Sbjct: 121 SIVIVGMVRAGYPQKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           L G++L++AIYI ARIKNLP +PF G K    ++ +A  GL L+ I+LG IYGG+ +PTE
Sbjct: 181 LMGVLLMVAIYIVARIKNLPSRPFPGVKALSLSSAKAMGGLALIFIVLGSIYGGVASPTE 240

Query: 241 AAAVAAVYSFFIANFIYRDMGPFAD---KTNTKPVLVKVVETFVH-----------KDTK 286
           AAAVA VY++ +A F YRD+GP  +   +   + +L  +V   +H           K+ +
Sbjct: 241 AAAVACVYAYLVAVFGYRDIGPLKEVPWRKEGEAILAAIVRNLLHVGLGLIKTPTDKEIR 300

Query: 287 ATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLV 346
             + D  K++IML+FIIANA++  HVLT ERIP +I E+++  GL P  FLI+VNL+LL 
Sbjct: 301 NVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAETIVGWGLPPWGFLIIVNLLLLA 360

Query: 347 GGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVA 406
            G FMEPS +L+I+AP++FPIA+ LGIDPIHLGI+MVVNMEIGM+TPPVGLNLFVT+G+ 
Sbjct: 361 AGNFMEPSAILLIMAPILFPIAVQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGIT 420

Query: 407 KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445
             S+  V+ A LPW+ ++  FL+++TYVP +S +LP  L
Sbjct: 421 GRSIGWVIHACLPWLLLLLGFLVLITYVPQISLFLPEYL 459