Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  435 bits (1118), Expect = e-126
 Identities = 222/445 (49%), Positives = 306/445 (68%), Gaps = 21/445 (4%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M+  ++F L++ +M+ G+PI+ISLGL+ + FL   +   + SVA  LF      + ++AI
Sbjct: 1   MSALIIFTLLLCLMLTGMPISISLGLTVLTFLFTMTTVPIESVALKLFTGIE-KFEIMAI 59

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFILA  F++ GGVAKR+I FA AMVG + GGL +  VVAC +FAA+SGSSPATVVAIG
Sbjct: 60  PFFILAGNFLTHGGVAKRMINFATAMVGHWYGGLGLGGVVACALFAAISGSSPATVVAIG 119

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SI++  MVK G+ + F AGVI  +G LGILIPPS+VMV+Y+ ATN SVG +F+ GVVPGL
Sbjct: 120 SILLPAMVKQGFPRRFGAGVITTSGALGILIPPSLVMVMYAVATNTSVGALFMAGVVPGL 179

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           +   +L +   + AR  N P+ P   W    KA +EA WGL+LVVI++GGIY GIFTPTE
Sbjct: 180 VLATLLGVTTSVIARKNNYPRLPKASWATRAKAFREAIWGLMLVVIVIGGIYSGIFTPTE 239

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
           AAA++AVY+F IA F+Y+DM P          +VK+            L  +  ++ ML+
Sbjct: 240 AAAMSAVYAFLIAVFVYKDM-PLRG-------VVKI------------LLSSASMSAMLL 279

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
           +II NA++   VL  E IPQ I + ++   LG + FL+VVN++LL  G FMEPS +++I+
Sbjct: 280 YIITNAVLFSFVLANENIPQAIADWIVGKELGIVAFLLVVNVLLLAAGNFMEPSSIVLIM 339

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420
           AP++FP+A+ LGIDP+H GI+++VNME+GM  PPVGLNL+V SG+ KM +  +  A +PW
Sbjct: 340 APILFPVAMKLGIDPVHFGILIIVNMEVGMCHPPVGLNLYVASGITKMGISELTVAVMPW 399

Query: 421 VGVMFLFLIIVTYVPWVSTWLPTLL 445
           +  M  FLI+VTY P +S WLP  L
Sbjct: 400 LLTMLGFLIVVTYWPGLSLWLPRAL 424