Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  256 bits (654), Expect = 1e-72
 Identities = 159/449 (35%), Positives = 246/449 (54%), Gaps = 29/449 (6%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           MA   LF + +G+ ++G P+A++LGL+  + +L  +   + SV  T++   A  Y LLAI
Sbjct: 1   MATLSLFAVFLGLTLLGAPLAVALGLAGSVAIL-EAQLGILSVPTTVYAGIA-KYPLLAI 58

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           P FILA       GVA++++ FA ++VG   GGLAI +V+ CM+   +SGS PA   A+ 
Sbjct: 59  PVFILAGLIFERVGVARQLVSFASSIVGARNGGLAIVAVLVCMVMGGISGSGPADAAAVA 118

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSA-ATNVSVGRMFLGGVVPG 179
           +++I  + K GY K F+A VI       ILIPPS+  ++YS      SV  +F GG++PG
Sbjct: 119 TVMIPSLHKAGYPKAFSASVIAAGAATAILIPPSVAFIIYSVLVPQASVPALFAGGLIPG 178

Query: 180 LLAGLMLIIAIYITARIKNL---PKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIF 236
           LLAGL L+  I   +R          P  G+  +LK    A WGLL  VIILGG+  G+F
Sbjct: 179 LLAGLSLLAPIVYLSRRHGFGMADSGPRPGFWVSLKG---AIWGLLAPVIILGGLRLGLF 235

Query: 237 TPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLT 296
           TPTEAA VA  Y  F+  FI R        T +  +L+ +            L DA +++
Sbjct: 236 TPTEAAVVAVFYGLFVGVFILR--------TLSGRMLIDM------------LADAAEMS 275

Query: 297 IMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGL 356
            +++ IIA A +     +       +  + L A    +  L+++NL+LL  G  ++   +
Sbjct: 276 GVVLLIIALASVFAWAGSTLGAFDAVAGAALQATDNEVVVLLMLNLLLLGLGMVLDAVSI 335

Query: 357 LVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKA 416
            +I+ PL+ P   A   DP+  G+M+ +N+ +G  TPP+ +NL VT+ +A + M      
Sbjct: 336 FLILLPLLVPFMEAFHWDPVWFGVMVTMNLAVGQFTPPMAVNLMVTTRIAGVRMEAATGW 395

Query: 417 ALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445
            L +VG M + L++VT+VP ++ WLP  L
Sbjct: 396 TLWFVGAMIVALMVVTFVPELTLWLPRAL 424