Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP transporter large permease from Rahnella sp. WP5

 Score =  320 bits (820), Expect = 6e-92
 Identities = 179/444 (40%), Positives = 272/444 (61%), Gaps = 25/444 (5%)

Query: 4   ALLFILVIGMMI-VGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIPF 62
           AL+ +L + +M+ +GVP+A ++GLS++    W  D    ++   L N     ++LLAIPF
Sbjct: 3   ALILLLTLAVMLAIGVPVAYAVGLSALAGAWW-IDLPFEALMIQLTND-VNKFSLLAIPF 60

Query: 63  FILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSI 122
           FILA   M+ GG+A+R++ FA   VG+ RGGL++ ++VA   F A+SGSS A   +IGS+
Sbjct: 61  FILAGAIMAEGGIARRLVSFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 123 VIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATN--VSVGRMFLGGVVPGL 180
           +I  M K GY ++FAA V  +     IL PPS   V+YS AT   VS+  +F+ G++PGL
Sbjct: 121 MIPEMEKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSIAALFIAGILPGL 180

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           L  L L++   + A  +  PK   V +++ALK   +  WGL+ +VII+GGI  GIFT TE
Sbjct: 181 LLSLTLMVMCVVFAHKRGYPKGERVPFRQALKIFIDTLWGLMTIVIIMGGILSGIFTATE 240

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
           +AA+A ++SFF+  FIYRD      K +  P L               +Y   K   ++M
Sbjct: 241 SAAIACLWSFFVTMFIYRDY-----KWSELPKL---------------MYRTVKTVSIVM 280

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
            +I  A     V+T  ++P  ITE   S        L+ +N++LLV G  M+ + +++I+
Sbjct: 281 ILIGFAASFGAVMTYMQLPMRITEFFTSISDNKYVILMWINIMLLVIGTLMDMAPIILIL 340

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420
            P++ P+ ++LGIDP+H G++M+VN+ IG+ITPPVG  LFV S V+K S+  VVKA LP+
Sbjct: 341 TPVLLPVVLSLGIDPVHFGMIMLVNLGIGLITPPVGSVLFVASAVSKQSIEKVVKAMLPF 400

Query: 421 VGVMFLFLIIVTYVPWVSTWLPTL 444
             V+F+ L++VTY+P +S +LP L
Sbjct: 401 YCVLFVVLMLVTYIPTISLFLPKL 424