Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., TRAP transporter large permease from Rhodopseudomonas palustris CGA009

 Score =  241 bits (615), Expect = 4e-68
 Identities = 158/467 (33%), Positives = 251/467 (53%), Gaps = 50/467 (10%)

Query: 8   ILVIGMMIVGVPIAISLGLSSILFL-LWHSDASLASVAQTLFNAFAGHYTLLAIPFFILA 66
           +  +  M  G+PIA +LG  +++F+ ++   ASL +V Q ++   A   TLL+IP FIL 
Sbjct: 12  LATLAAMFSGMPIAFALGAVALVFMAIYMPHASLDTVTQNVYEEMAS-ITLLSIPLFILK 70

Query: 67  STFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIVIAG 126
              +      + +     A +    GGL +A+V AC +FAA++GSSPAT  AIGS  I  
Sbjct: 71  GAAIGKSRAGQDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATCSAIGSAGIPE 130

Query: 127 MVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGLLAGLML 186
           M K GYS  FAAG+I   GTLGIL+PPSI M++++ A   S+GR+FL G+ PGLL  L+ 
Sbjct: 131 MRKRGYSGGFAAGIIAAGGTLGILLPPSITMILFAVAAEKSLGRLFLAGIGPGLL--LVT 188

Query: 187 IIAIYITARIKNLPKQPFVGWKEALKAAKEAS-------------WG----LLLVVIILG 229
           +  IY   R     ++ +   K A +A  + S             +G    +L  VI+L 
Sbjct: 189 LFGIYAVVRF----RKEYATAKAAYEATGQTSAILTDEKFTMAQRFGALPRVLPFVILLT 244

Query: 230 GI----YGGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDT 285
           G+    YGG  TP+E A +  + +  +   IY    P    ++  P++   +        
Sbjct: 245 GVMIALYGGYATPSETAGLGGLLALLLIALIYGVWKP----SDLSPIMTSTI-------- 292

Query: 286 KATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILL 345
                   + + MLM II  +L+  +V++   I Q   E++++  L     L  +  +++
Sbjct: 293 --------RESTMLMMIIGMSLLYSYVMSYLHISQSAAEAIVAMQLPRWGLLAAILALVV 344

Query: 346 VGGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGV 405
           V G F+ P  ++++ AP++ P   A G D I  G++M + ME+G+I PPVGLN+FV   V
Sbjct: 345 VLGFFLPPVSIILMTAPIILPPLRAAGFDIIWFGVVMTIVMEMGLIHPPVGLNIFVIRNV 404

Query: 406 A-KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLLMGPEII 451
           A  + +  V+   LP+V +M L ++++  +P +STWLP L+MGPE I
Sbjct: 405 APDIPLSEVIWGTLPFVLLMMLAVLLLCLIPGISTWLPDLVMGPESI 451