Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score =  267 bits (683), Expect = 4e-76
 Identities = 158/449 (35%), Positives = 250/449 (55%), Gaps = 27/449 (6%)

Query: 4   ALLFILVIGMMIVGVPIAISLGLSSILFL--LWHSDASLASVAQTLFNAFAGHYTLLAIP 61
           A+ F+ +  +M++ VP+ +++GL  +     L   + +L  V QT        Y+   IP
Sbjct: 8   AIGFVSLFVLMLLRVPVGMAMGLVGVTGFGYLTGFEPALKLVGQTTMRTVTD-YSFGVIP 66

Query: 62  FFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGS 121
            F+L   F+S  G+++ + R    +VG ++GGL IA++ AC  FAA+SGSS AT     +
Sbjct: 67  MFLLMGAFVSASGISRELFRAGNTIVGHWKGGLGIATIAACGGFAAISGSSVATAATFSA 126

Query: 122 IVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGLL 181
           +    M + GY + F+ GVI   GTLG ++PPS V+ VY   T   +G++F+ G++PGLL
Sbjct: 127 VAYPEMRRFGYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAGILPGLL 186

Query: 182 AGLMLIIAIYI--TARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPT 239
           A +M +I I+I   AR   LP  P   W + L A ++    LLL + ++GG+YGG F PT
Sbjct: 187 AIVMHMITIWIIGVARPGFLPAGPKSSWGDRLAAFRDVWSPLLLFLFVIGGLYGGFFIPT 246

Query: 240 EAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIML 299
           EA AV AV +F I        G    K + + +L  +++        AT   A   T+++
Sbjct: 247 EAGAVGAVGAFLI--------GILRGKLDREGILQSLLQ--------ATRTAAAVFTVLI 290

Query: 300 MFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVI 359
                 AL   + LT  + PQ +TE +   G+GP   L ++ L+ LV G  M+   ++++
Sbjct: 291 -----GALCFGYFLTITQTPQYVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVIL 345

Query: 360 VAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAK-MSMMNVVKAAL 418
             P+VFP+  ALG DPI  GI++V+ +E+G+I PPVG+N+FV   V K +SM  V    L
Sbjct: 346 TVPIVFPVVTALGFDPIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVSMSTVFAGVL 405

Query: 419 PWVGVMFLFLIIVTYVPWVSTWLPTLLMG 447
           P+V    + L+I+   P ++ WLP  ++G
Sbjct: 406 PFVVTDLIRLVILIAFPIIALWLPMRMIG 434