Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score =  505 bits (1301), Expect = e-147
 Identities = 261/456 (57%), Positives = 345/456 (75%), Gaps = 14/456 (3%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M +A LFI +   M++G+PIAI+LG SS+L +L  SD SLASVA  L+ + + HYTLLAI
Sbjct: 1   MTIATLFISLFLCMLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAI 60

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFIL+S F+STGGVA+RII FA+  VG  RGGLA+ASV+ACM+FAA+SGSSPATV AIG
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SIVI GMV+ GY ++FAAGVI  +GTLGILIPPSIVM+VY+AAT VS  RMF+ G++PGL
Sbjct: 121 SIVIVGMVRAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           + GL+L++AIYI ARIK LP +PF G++    ++ +A  GL L+VI+LG IYGGI +PTE
Sbjct: 181 MMGLLLMLAIYIVARIKKLPSRPFPGFRPLAISSAKAMGGLALIVIVLGSIYGGIASPTE 240

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKT--------------NTKPVLVKVVETFVHKDTK 286
           AAAVA VY++FIA F YRD+GP  + +              N   +++ V +T   K+ +
Sbjct: 241 AAAVACVYAYFIAVFGYRDIGPLKNVSWRDSGEPLIRAILRNLGFMVLAVFKTPADKEIR 300

Query: 287 ATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLV 346
             + D  K++IML+FIIANA++  HVLT ERIP +I E+++  GL    FLI+VNL+LL 
Sbjct: 301 HVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLIIVNLLLLA 360

Query: 347 GGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVA 406
            G FMEPS +L+I+AP++FPIA  LGIDPIHLGI+MVVNMEIGM+TPPVGLNLFVT+G+ 
Sbjct: 361 AGNFMEPSAILLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGIT 420

Query: 407 KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLP 442
             SM  V+ + +PW+ ++  FL ++TY+P +S +LP
Sbjct: 421 GRSMGWVIHSCIPWLALLLFFLALITYIPQISLFLP 456