Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  339 bits (869), Expect = 2e-97
 Identities = 183/441 (41%), Positives = 275/441 (62%), Gaps = 22/441 (4%)

Query: 2   AVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIP 61
           AV LLF   +  ++VGVPIA SLGL++I  +L      L  +AQ  F +    + +LAIP
Sbjct: 220 AVWLLFGYFVLFLLVGVPIAFSLGLATIATVLGAGTLPLEYLAQIAFVSIDS-FPILAIP 278

Query: 62  FFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGS 121
           FFI A  FM  GG+++R++     +VG   GG+A+A++V CM FAA+SGS PATV AIGS
Sbjct: 279 FFIAAGVFMGAGGLSRRLLALGDELVGALPGGMALATIVTCMFFAAISGSGPATVAAIGS 338

Query: 122 IVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGLL 181
           I I  MV+ GY K FAA V+ +AG +G++IPPS   VVY  A   SVG++FL G+VPG+L
Sbjct: 339 ITIPAMVERGYDKFFAAAVVASAGCIGVMIPPSNPFVVYGVAAQASVGKLFLAGIVPGVL 398

Query: 182 AGLMLI-IAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
            GL L+ +A YI+ +     +     ++  ++A  EA W LL+ VI+LGGIYGGI TPTE
Sbjct: 399 CGLALMAVAYYISLKKGWRGEARHRDFRSVMQAMWEAKWALLVPVIVLGGIYGGIMTPTE 458

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
           AAAV+A+Y   +  FIYR++                      +     + ++ + + +++
Sbjct: 459 AAAVSALYGMIVGLFIYREI--------------------TWRRMWDCMVESAQTSSVII 498

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
            ++A A +  +++T E++P  I   +L      I  L+++N+ LL  G FME    +VI+
Sbjct: 499 VLMAMATLFGNIMTIEQVPDHIAAMILGVTSNKIAILLLINVFLLWVGTFMEALAAIVII 558

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420
            P++ P+   +G+DPIH G++MVVN+ IG ITPPVG+NLFV S ++K+S+ +VV+AA P+
Sbjct: 559 TPILLPLVTQVGVDPIHFGVIMVVNLAIGFITPPVGVNLFVASSISKVSIGDVVRAAWPF 618

Query: 421 VGVMFLFLIIVTYVPWVSTWL 441
           + VM   L+ +TY+P +S  L
Sbjct: 619 LLVMIALLMAITYIPAISLCL 639