Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  501 bits (1291), Expect = e-146
 Identities = 260/459 (56%), Positives = 348/459 (75%), Gaps = 14/459 (3%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           MA+A LF ++   M +G+PIAI+LG SS+L +L+ S+ SLASVA  L+ + + HYTLLAI
Sbjct: 1   MAIATLFCVLFICMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAI 60

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFIL+S F+STGGVA+RII FA+  VG  RGGLA+ASV+ACM+FAA+SGSSPATV AIG
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SIVI GMVK GY ++FA+GVI  +GTLGILIPPSIVM+VY+AAT VSV ++F+ G+VPGL
Sbjct: 121 SIVIVGMVKAGYPEKFASGVITTSGTLGILIPPSIVMLVYAAATEVSVAKIFMAGLVPGL 180

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           L G ++++ IYI ARIKNLP  PF G+K+   ++ +A  GL L+ I+LG IYGG+ +PTE
Sbjct: 181 LLGFLIMVVIYIVARIKNLPSIPFPGFKKLGVSSAKAIGGLALIFIVLGSIYGGVASPTE 240

Query: 241 AAAVAAVYSFFIANFIYRDMGPF--------------ADKTNTKPVLVKVVETFVHKDTK 286
           A+AVA VY++FIA F YRD+GP               A   N   +++ +++T + K+ +
Sbjct: 241 ASAVACVYAYFIAVFGYRDIGPLKNVAWRNPNEAIPSAIARNLGHMVLGLIKTPIDKEIR 300

Query: 287 ATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLV 346
             + D  K++IML+FIIANA++  HVLT ERIP +I E ++  GL    FLI+VNL+LL 
Sbjct: 301 HVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEYIVGMGLPAWGFLIIVNLLLLA 360

Query: 347 GGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVA 406
            G FMEPS +++I+AP++FPIA  LGIDPIHLGI+MVVNMEIGM+TPPVGLNLFVTSG+ 
Sbjct: 361 AGNFMEPSAIVLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTSGIT 420

Query: 407 KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445
             ++  V+++ LPW+  M  FL+++TYVP +S +LP LL
Sbjct: 421 GRNIGWVIQSVLPWLVFMLAFLMLITYVPQISLFLPELL 459