Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  263 bits (672), Expect = 8e-75
 Identities = 159/449 (35%), Positives = 248/449 (55%), Gaps = 24/449 (5%)

Query: 4   ALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIPFF 63
           AL+    I ++  GV +AI L + S  FL+         +   +F     ++ LL+IP F
Sbjct: 8   ALVAFATIIVLFSGVSVAIGLLIVSAGFLIVFDGMRSLELMPEIFFGKLDNFALLSIPMF 67

Query: 64  ILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIV 123
           I+    +++      +       +    GGL I+++ AC +F+A+SGSSPAT  AIG + 
Sbjct: 68  IIMGASIASTRAGADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATCAAIGKMG 127

Query: 124 IAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPG-LLA 182
           I  M K GY  E AAG I   GTLGILIPPS+ M+VY  AT  S+GR+FL GV PG LL 
Sbjct: 128 IPEMRKRGYPDEVAAGSIAAGGTLGILIPPSVTMIVYGIATETSIGRLFLAGVFPGLLLV 187

Query: 183 GLMLIIAIYITARIKN--LPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           GL ++ ++Y T R  N  +       WK+  +        +++++ +L  +YGG+ TP+E
Sbjct: 188 GLFMLWSLYSTWRSGNTAVLTATVYTWKQKFEILPRVLPFIVIIIGVLYAMYGGVATPSE 247

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300
            AAV A+    IA  IY+   P           VK+ E          L D+ K ++M++
Sbjct: 248 TAAVGALLCLLIAMIIYKLWSP-----------VKLWE---------VLRDSTKESVMIL 287

Query: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360
           FIIA A +  ++L+   I Q I E + +  +     +  +NL LLV G F+ P  ++++ 
Sbjct: 288 FIIAAAGVFSYMLSSLFITQAIAEWIGTLEVNRWVLMGAINLFLLVAGFFLPPVAVILMT 347

Query: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVA-KMSMMNVVKAALP 419
           AP++ PI    G DPI   +++ +NMEIG+I+PPVGLNL+V +G+A  + +  ++  +LP
Sbjct: 348 APVLLPIITTAGFDPIWFAVILTINMEIGLISPPVGLNLYVINGIAPDIKLKTILVGSLP 407

Query: 420 WVGVMFLFLIIVTYVPWVSTWLPTLLMGP 448
           +V  M L ++I+   P ++TWLP  +MGP
Sbjct: 408 YVACMVLAILILCVFPGIATWLPDAVMGP 436