Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  238 bits (608), Expect = 2e-67
 Identities = 147/449 (32%), Positives = 248/449 (55%), Gaps = 17/449 (3%)

Query: 3   VALLFILVIGMMIVGVPIAISL-----GLSSILFLLWHSDASLASVAQTLFNAFAGHYTL 57
           V L+ + V  + ++GVP+ + +     G S +L L      +L ++   + N F   + L
Sbjct: 7   VTLISVGVTFLFMLGVPVFLVIAYWVIGCSFVLGL------TLDNMGAEILNVFNKGFAL 60

Query: 58  LAIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVV 117
           LA+P FIL    ++  G+A+R+  FA A +GW RGGLA+AS+ AC +FAA+SGS+ AT  
Sbjct: 61  LAMPLFILTGDLINKSGIARRLSDFAYACLGWLRGGLAMASLGACGLFAAISGSNSATTA 120

Query: 118 AIGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVV 177
            IGS++   MVK GY + F+A      GT+GI+IPPSI+ +VY    N+ +  +F+ G++
Sbjct: 121 TIGSMLHPEMVKGGYDERFSAATAAAGGTVGIIIPPSIIFIVYGFLMNLPISDLFVAGII 180

Query: 178 PGLLAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFT 237
           PG L  + + +A +I  RI        +     LK A  A  G   + ++L GIY G F+
Sbjct: 181 PGALMVIGMQLACWIICRINGWGFIIPLQLNRVLKTAFGAWLGFFAIGLVLWGIYTGKFS 240

Query: 238 PTEAAAVA---AVYSFFIANFIYRDMGPFADKTNTKPVL--VKVVETFVHKDTKATLYDA 292
           PTEAA V     V +  ++  + R +   +DKT  +     + VVE F  +        +
Sbjct: 241 PTEAAGVTVGFCVIAGLVSWVLTRVLRLRSDKTWEEKSYGEMLVVEGFTLRQIPGITMRS 300

Query: 293 GKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFME 352
            ++T +L  +IA +++++ +L+     Q+I + + S G G    L    +I+   G  +E
Sbjct: 301 AEITGILAPLIAISVVMQQILSLLGAQQVIGDFVTSMG-GYHAVLFTAMVIVFFSGMVLE 359

Query: 353 PSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMN 412
              + +I+AP++ PIA ++G+DPIH  ++ +V   IG ITPP GLNL+V SGV  +    
Sbjct: 360 SLPVTIILAPILAPIAASVGVDPIHFAVIFLVGASIGFITPPYGLNLYVASGVTGVPYFR 419

Query: 413 VVKAALPWVGVMFLFLIIVTYVPWVSTWL 441
           +++  +P++  +    I+V+  P ++ +L
Sbjct: 420 LLRYTVPYLVALISVWILVSLTPELALFL 448