Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  503 bits (1295), Expect = e-147
 Identities = 257/459 (55%), Positives = 346/459 (75%), Gaps = 14/459 (3%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           MA+A LF  ++  M +G+PIAI+LG SS+L +L+ S+ SLASVA  L+ + + HYTLLAI
Sbjct: 1   MAIATLFTALLVCMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAI 60

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFIL+S F+STGGVA+RII FA+  +G  RGGLA+ASV+ACM+FAA+SGSSPATV AIG
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDSIGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
           SIVI GMVK GY ++FAAGVI  +GTLGILIPPSIVM+VY+AAT VS  RMF+ G++PGL
Sbjct: 121 SIVIVGMVKAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240
           + G +L+I IYI AR KNLP +PF G+K+   ++ +A  GL L++I+LG IYGG+ +PTE
Sbjct: 181 MMGFLLMIVIYIVARFKNLPSRPFPGFKQLGISSAKALGGLALIIIVLGSIYGGVASPTE 240

Query: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKP--------------VLVKVVETFVHKDTK 286
           A+AVA +Y++FIA F YRD+GP  +     P              + + +++T + K+ +
Sbjct: 241 ASAVACMYAYFIAVFGYRDIGPLKNVAWRNPNEPIPSAIVRNLGHMALGLIKTPIDKEIR 300

Query: 287 ATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLV 346
             + D  K++IML+FIIANA++  HVLT ERIP +I E ++  GL    FLI+VNL+LL 
Sbjct: 301 HVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEHIVGMGLPAWGFLIIVNLLLLA 360

Query: 347 GGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVA 406
            G FMEPS +++I+AP++FPIA  LGIDPIHLGI+MVVNMEIGM+TPPVGLNLFVT+G+ 
Sbjct: 361 AGNFMEPSAIVLIMAPILFPIATHLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGIT 420

Query: 407 KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445
             S+  V+++ LPW+ +M  FL ++TYVP +S +LP  L
Sbjct: 421 GRSIGWVIQSVLPWLALMLAFLALITYVPQISLFLPEFL 459