Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  434 bits (1116), Expect = e-126
 Identities = 227/436 (52%), Positives = 295/436 (67%), Gaps = 2/436 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V +++D+  + +   Q+  L D+      S EEAL  +       +++SDI LPG+ G  
Sbjct: 7   VLIVEDDPHVLLGCKQALTLEDIPCIGVGSAEEALERVD-DNFAGIVISDIRLPGIDGLE 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +  +D  LPV+LITGHGDISMAV AM  GAYDF+EKPF+PERL+D   RA+E+R L
Sbjct: 66  LLTRLKARDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSL 125

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E   L+R L    +L  RIIG + A+Q LR  IA VADT A++L+ GETGTGKELVAR
Sbjct: 126 AREVSSLRRQLAERDSLEGRIIGRSPAMQHLRALIANVADTSANVLIEGETGTGKELVAR 185

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+ S R ++ FVA+NCG +PENL ESE++GHE  AFTGA  RR+GK EHA GGTLFLD
Sbjct: 186 CLHDFSRRHDKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLD 245

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+ESMP+  QI+LLRVLQER +ER+GSN+ + +D RVIAATK DL +    G+FR DLYY
Sbjct: 246 EVESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMGRTGQFRSDLYY 305

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VTL +PPLRERREDI  LF HFL  ++ R+ +    L    + +L+SHDWPGNVRE
Sbjct: 306 RLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRTVPELDNQTLSNLMSHDWPGNVRE 365

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           LRN AERY  LG  A         ++ L   E V  FE++LL   L   GG++    + L
Sbjct: 366 LRNVAERYA-LGLPAFKRSGASGGNQGLAFAEAVEAFERNLLVDALQRSGGNLTQASQEL 424

Query: 424 HLPRKTLYDKMQKYQL 439
            + + TL+DK++KY L
Sbjct: 425 GMAKTTLFDKVKKYGL 440