Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Nitrogen regulation protein NR(I) from Pseudomonas fluorescens FW300-N2E2

 Score =  432 bits (1111), Expect = e-125
 Identities = 226/441 (51%), Positives = 295/441 (66%), Gaps = 5/441 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  IR A+ Q   L+    Q FA  +E L  +  +  P VI+SD+ +PGLSG  
Sbjct: 5   VMVVDDEGSIRSAVEQWLSLSGFQVQLFARADECLARLP-EHFPGVILSDVRMPGLSGLE 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V  +D +LPVIL+TGHGD+ MAV+AM DGAYDF+EKPF+PE L+ ++ RA++KR L
Sbjct: 64  LLAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTL 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+L         L   ++G + A+Q LR  +  +A    ++L+ GETG+GKELVAR
Sbjct: 124 VLENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVAR 183

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+  +R    FVA+NC A+PE L E+EL+GHE GAFTGA  +R+GK E+A GGTLFLD
Sbjct: 184 CLHDFGTRASMPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYANGGTLFLD 243

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMP+  Q++LLRVLQE+ +ER+GSN+ I +D+R+IAATK DL   A  G+FR+DL Y
Sbjct: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIQVDLRIIAATKPDLLDEARAGRFREDLAY 303

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLNI  L +PPLRERREDIP LF HF   AA R G+AA  L+   +  LLSHDWPGNVRE
Sbjct: 304 RLNIAELRLPPLRERREDIPLLFEHFTHSAAERLGRAAAPLSGPQLSHLLSHDWPGNVRE 363

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           L N AER VL     Q  E+   +S    L  Q   FE   L   L    G +KA +E L
Sbjct: 364 LANVAERQVLGLDQPQALETEPGQS----LAAQQEAFEAQCLRAALTRHKGDVKAVLEEL 419

Query: 424 HLPRKTLYDKMQKYQLDKESY 444
            LPR+T  +KMQ++ L +E +
Sbjct: 420 QLPRRTFNEKMQRHGLSREMF 440