Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas fluorescens FW300-N2E2

 Score =  432 bits (1111), Expect = e-125
 Identities = 233/443 (52%), Positives = 308/443 (69%), Gaps = 7/443 (1%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           +V LIDD+  +R AL+Q+ +LA L     A  +  +     +  P V+VSDI +PG+ G 
Sbjct: 8   EVVLIDDDPHLRQALSQTLDLAGLKILPLAEAK-GVAGQLPRDWPGVVVSDIRMPGMDGL 66

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
            LL+ +  QD+ELPV+LITGHGD+ +AV+AM  GAYDF+EKPFA + L+D+V RA+  RR
Sbjct: 67  ELLNELHAQDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDHLLDSVRRALALRR 126

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           L L+NR L+ +L     L  R++G++  +  LR+ I  +A T+AD+L+ GETG GKE+VA
Sbjct: 127 LVLDNRSLRLALSDRHELSARLVGQSTPMLRLREQIGALAATRADVLILGETGAGKEVVA 186

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R+LH+ SSRR   FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLFL
Sbjct: 187 RALHDLSSRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL 246

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEIESM +  Q++LLR+LQERV+ER+G N  IPLDIRVIAATK DL+QAA +G+FR DLY
Sbjct: 247 DEIESMSLDVQVKLLRLLQERVVERLGGNHQIPLDIRVIAATKEDLRQAADQGRFRADLY 306

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRLN+  L IPPLRER ED   LF HF   A+AR+G     L  +    LL H WPGNVR
Sbjct: 307 YRLNVAPLRIPPLRERGEDTLMLFQHFADEASARHGLPPHELQPAQRALLLRHSWPGNVR 366

Query: 363 ELRNAAERYVLLGKLA--QFAESHEPKSKLL----GLNEQVAEFEKSLLEQTLIECGGSI 416
           EL+NAAER+ L  +LA    A    P + +     GL+EQV  FEK+L+   L     S+
Sbjct: 367 ELQNAAERFALGLELALDNSAPDGNPGAPVELVSGGLSEQVENFEKTLIAAELARPHSSV 426

Query: 417 KATMERLHLPRKTLYDKMQKYQL 439
           ++  E L +PRKTL+DK++K+ L
Sbjct: 427 RSLAEALGIPRKTLHDKLRKHGL 449