Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  295 bits (755), Expect = 2e-84
 Identities = 189/472 (40%), Positives = 266/472 (56%), Gaps = 47/472 (9%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V L++D+  +R ALA +  LA  +     S EEALLA+  +   LV VSD+ +PG+ G  
Sbjct: 5   VLLVEDDRALREALADTLVLAGHDYAAVGSAEEALLAVGREAFSLV-VSDVNMPGMDGHQ 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +  +LPV+L+T HG +  AV AM  GA D++ KPF P+ L+D V R       
Sbjct: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVAR------- 116

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                    SL V    GP  I E A+ Q L +  A+VA + + +L+ GE+GTGKE++AR
Sbjct: 117 -----HALGSLAVEGE-GPVAI-EPASAQLL-ELAARVARSDSTVLISGESGTGKEVLAR 168

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H+QS R  + F+AINC A+P+N++E+ L+GHEKG+FTGA + + GKFE A GGT+ LD
Sbjct: 169 YIHQQSRRASEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFEQADGGTILLD 228

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MPM  Q +LLRVLQER +ER+G+ + I LDIRV+A T  DL    A G+FR+DLYY
Sbjct: 229 EISEMPMGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLASEVAAGRFREDLYY 288

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL++  L   PLRER  DI  L    L     +   AA  L+A     L+++ WPGNVRE
Sbjct: 289 RLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNVRE 348

Query: 364 LRNAAERYVLLGK---------------------------LAQFAESHEPKSKLLG-LNE 395
           L NA +R ++L +                            A FA S E + +  G L +
Sbjct: 349 LDNAIQRALILQQGGLIQPEDFCLAGPVACAPLPALSPVPAAAFAPSVEVEGESAGALGD 408

Query: 396 QVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQ---LDKESY 444
            +   E  ++  TL    G  K   ERL +  +TL  K+ + +   +D E+Y
Sbjct: 409 DLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAY 460