Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  437 bits (1124), Expect = e-127
 Identities = 234/440 (53%), Positives = 303/440 (68%), Gaps = 4/440 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V LIDD+  +R AL+Q+ +LA L         E    + A   P V+VSDI +PG+ G  
Sbjct: 13  VLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADW-PGVVVSDIRMPGIDGLE 71

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +DSELPVILITGHGDI +AV+AM  GAYDF+EKPF  E L+D+V RA+  R+L
Sbjct: 72  LLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALRQL 131

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            L+NR L+ +L   Q L  R++G++ A+  LR+ I  +A TQAD+L+ GETG GKE+VAR
Sbjct: 132 VLDNRSLRLALADRQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGETGAGKEVVAR 191

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S+RR   FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLFLD
Sbjct: 192 ALHDLSNRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 251

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESM +  Q++LLR+LQERV+ER+G N+ I LDIRVIAATK DL+ AA +G+FR DLYY
Sbjct: 252 EIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRADLYY 311

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L IPPLRER EDI  LF HF    A R+G     L      +LL H WPGNVRE
Sbjct: 312 RLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALLRHAWPGNVRE 371

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLG---LNEQVAEFEKSLLEQTLIECGGSIKATM 420
           L+N AER+ L   L       EP S + G   L+EQV  FE++L+   L    GS+++  
Sbjct: 372 LQNTAERFALGLGLGLDQPGAEPTSSVAGTGNLSEQVEAFERALIAAELNRPHGSLRSVA 431

Query: 421 ERLHLPRKTLYDKMQKYQLD 440
           E L +PRKTL+DK++K+ L+
Sbjct: 432 EALGVPRKTLHDKLRKHGLN 451