Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas stutzeri RCH2

 Score =  288 bits (737), Expect = 3e-82
 Identities = 176/463 (38%), Positives = 258/463 (55%), Gaps = 35/463 (7%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           +V+++DD+  IR  L ++ +   +  Q F S +  +LA  A+  P VI+SDI +PGLSG 
Sbjct: 6   NVWIVDDDRSIRWVLEKALQQEGMATQSFDSAD-GVLARLARQQPDVIISDIRMPGLSGL 64

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
           ++LS +  Q   LPVI++T H D+  AV +   GA++++ KPF  +  +  V RA +  +
Sbjct: 65  DMLSQIREQYPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDDAVSLVKRANQHAQ 124

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
                 Q  +    ++   P IIGE  A+Q +   I +++ +   +L+ GE+GTGKELVA
Sbjct: 125 -----EQQNQQEPANRHHTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVA 179

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
            +LH  S R    F+A+N  A+P++L+ESEL+GHEKGAFTGA ++R G+FE A GGTLFL
Sbjct: 180 HALHRHSPRSASPFIALNMAAIPKDLMESELFGHEKGAFTGAANQRRGRFEQADGGTLFL 239

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  MP   Q RLLRVL +    R+G +  + +D+R+IAAT  DL+     GKFR+DL+
Sbjct: 240 DEIGDMPADTQTRLLRVLADGEFYRVGGHTPVRVDVRIIAATHQDLETLVQAGKFREDLF 299

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           +RLN++ + IP L +RREDIPAL  HFL  AA         L     + L    WPGNVR
Sbjct: 300 HRLNVIRIHIPRLSDRREDIPALAEHFLASAAQELSVETKVLKPETKEYLQHLPWPGNVR 359

Query: 363 ELRN--------AAERYV--------LLGKLAQFAESHEPKSKLLG-------------L 393
           +L N        A+ R V        LL + A+   +H  +  L               L
Sbjct: 360 QLENTCRWITVMASGREVHVDDLPPELLNQQAEAQPAHNWEQALRNWSDQALARGQSNLL 419

Query: 394 NEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK 436
           +E V  FE+ ++E  L    G  +     L   R TL  K+++
Sbjct: 420 DEAVPAFERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKE 462