Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  290 bits (743), Expect = 5e-83
 Identities = 174/459 (37%), Positives = 259/459 (56%), Gaps = 43/459 (9%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + L++D+  +R AL  + EL     +   S E AL A++ Q +  ++VSD+ +PG+ G  
Sbjct: 5   ILLVEDDRALREALGITLELGGYAYRAVDSAEAALSALQ-QDMFSLVVSDVNMPGMDGHE 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +  +  ++PV+L+T  G ++ AV AM +GA D++ KPF P  L++           
Sbjct: 64  LLALIRKRYPQIPVLLMTAFGAVARAVDAMREGAIDYLVKPFEPNTLLE----------- 112

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            L  R +  +L  +   GP  +   A+ Q L     +VA + + +L+FGE+GTGKE++AR
Sbjct: 113 -LLRRHINGALDAADAEGP--VACDASSQQLLGLARRVAQSDSTVLIFGESGTGKEVLAR 169

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H+QS R ++ F+AINC A+P+N++E+ L+GHEKGAFTGA + + GKFE A GGTL LD
Sbjct: 170 YIHQQSPRSKRPFIAINCAAIPDNMLEATLFGHEKGAFTGAIASQPGKFEQADGGTLLLD 229

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q +LLRVLQER +ER+G    I LDIRV+A T  DL    A G+FR+DLYY
Sbjct: 230 EISEMPLGLQAKLLRVLQEREVERVGGRRPITLDIRVLATTNRDLVGEVAAGRFREDLYY 289

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL++  L+  PLR+R  DI  L    L   A +  + +  L+A+  + LL H WPGNVRE
Sbjct: 290 RLSVFPLSWSPLRQRPADILPLAERLLASRARKMRQGSAQLSAAAQRCLLGHPWPGNVRE 349

Query: 364 LRNAAERYVLL--GKLAQFAE--------------------------SHEPKSKLLGLNE 395
           L NA +R ++L  G L Q  +                          +  P+     L +
Sbjct: 350 LDNAIQRALILQQGGLIQPEDLCLSGVSNVASLPTPVAVAQTPSDLITEGPRESCSALGD 409

Query: 396 QVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKM 434
            +   E  L+  TL    G  K T +RL +  +TL  K+
Sbjct: 410 DLRRREFQLIIDTLRAERGRRKETADRLGISARTLRYKL 448