Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  427 bits (1098), Expect = e-124
 Identities = 230/441 (52%), Positives = 307/441 (69%), Gaps = 8/441 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGL--PLVIVSDICLPGLSG 61
           V LIDD+S +R AL Q+ +LA LN     S+ EA    +  G   P V+VSDI + G+ G
Sbjct: 13  VVLIDDDSHLRQALRQTLDLAGLNV---LSLPEATGLAERIGRDWPGVVVSDIRMQGMDG 69

Query: 62  QNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKR 121
             LL  +  QD +LPV+LITGHGD+ +AVKAM  GAYDF+EKPFA + ++D+V RA+  R
Sbjct: 70  LELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALR 129

Query: 122 RLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181
           RL L+NR L+ +L   Q L  R+IG++  I  LR+ I  +A T+AD+L+ GETG GKE+V
Sbjct: 130 RLVLDNRSLRLALSDRQQLSTRLIGQSPPILRLREQIGALAGTRADVLILGETGAGKEVV 189

Query: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241
           AR+LH+ S+RR   FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLF
Sbjct: 190 ARALHDLSNRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLF 249

Query: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301
           LDEIESM +  Q++LLR+LQERV+ER+GSN+ IPLDIR+IAATK DL+ AA +G+FR DL
Sbjct: 250 LDEIESMSLDVQVKLLRLLQERVVERMGSNQQIPLDIRIIAATKEDLRHAADQGRFRADL 309

Query: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361
           YYRLN+ +L IPPLRER ED   LF H+   A+ R+G     L       LL H+WPGNV
Sbjct: 310 YYRLNVASLRIPPLRERGEDALMLFEHYADAASMRHGIPKHELKPGQRALLLRHNWPGNV 369

Query: 362 RELRNAAERYVL---LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKA 418
           REL+NAAER+ L   L    +  ++ +      GL++QV  FE++L+   L     S+++
Sbjct: 370 RELQNAAERFALGLELELEPEGVDAEQAPPPGGGLSDQVESFERALIAAELARPHSSVRS 429

Query: 419 TMERLHLPRKTLYDKMQKYQL 439
             E L +PRKTL+DK++K+ L
Sbjct: 430 LAEALGVPRKTLHDKLRKHGL 450