Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  418 bits (1075), Expect = e-121
 Identities = 217/441 (49%), Positives = 298/441 (67%), Gaps = 3/441 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE+ IR A+ Q   L+    Q FA  EE L  +  +  P V+++D+ +PG+SG  
Sbjct: 5   VIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAHLP-EHFPGVVLTDVRMPGMSGLE 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +   D +LPVIL+TGHGD+ MAV+AM +GAYDF+EKPF+PE LI  + RA+EKR+L
Sbjct: 64  LLTRLQGADRDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRALEKRQL 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+L         L   ++G +  +QTLR  + ++A    ++++ GETG+GKELVAR
Sbjct: 124 VLENRRLHEQADARTRLDATLLGVSPGMQTLRRQVLELAQLPVNVIIRGETGSGKELVAR 183

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+   R  + FVA+NC A+PE+L E+EL+GHE GAFTGA  +R+G+ E+A GGT+FLD
Sbjct: 184 CLHDFGPRAARPFVALNCAAIPEHLFEAELFGHESGAFTGAQGKRIGRLEYADGGTVFLD 243

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMPM  Q++LLRVLQ++ +ER+GSN+ I +D+R+IAATK DL + A  G+FR+DL Y
Sbjct: 244 EIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPDLLEEARAGRFREDLAY 303

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L +PPLRER EDI  LF HF   AA R G+ A AL A+ +  LL HDWPGNVRE
Sbjct: 304 RLNVAELRLPPLRERLEDIAQLFSHFARAAAERVGREAPALDAARLSLLLGHDWPGNVRE 363

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           L NAAER  L   L Q     + + +   L  +   FE   L  +L    G IKA +  L
Sbjct: 364 LANAAERQAL--GLEQALPQPDTQWQGHSLAARQEAFEAQCLRASLARHKGDIKAVLNEL 421

Query: 424 HLPRKTLYDKMQKYQLDKESY 444
            LPR+TL +KMQ++ L +E++
Sbjct: 422 QLPRRTLNEKMQRHALVRETF 442