Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  435 bits (1119), Expect = e-126
 Identities = 227/437 (51%), Positives = 300/437 (68%), Gaps = 4/437 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V +++D+  + +   Q+  L D+ ++  +S EEAL  I       +++SDI LPG+ G  
Sbjct: 9   VLIVEDDPHVLLGCQQALALEDIASEGVSSAEEALKRID-DNFAGIVISDIRLPGIDGLE 67

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LLS +  +DS LPV+LITGHGDI+MAV AM DGAYDF+EKPF+PERL+D   RA+E+R L
Sbjct: 68  LLSRLKARDSSLPVVLITGHGDITMAVNAMRDGAYDFMEKPFSPERLVDVTRRALEQRGL 127

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E   L++ L    +L  RIIG + A+Q LR  IA VADT A++L+ GETGTGKELVAR
Sbjct: 128 AREVWALRKQLAERDSLEGRIIGRSPAMQNLRALIANVADTSANVLIEGETGTGKELVAR 187

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+ S R++  FVA+NCG + E+L ESE++GHE  AFTGA  RR+GK EHA  GTLFLD
Sbjct: 188 CLHDFSRRKDSQFVALNCGGLAESLFESEIFGHEANAFTGAGKRRIGKIEHAHNGTLFLD 247

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+ESMP+  QI+LLRVLQER +ER+GSN+ + +D RVIAATK DL       +FR DLYY
Sbjct: 248 EVESMPVNLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLNALGKTNQFRSDLYY 307

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VTL +PPLRERREDI  LF HFL +++ R+ +    L      +L+SHDWPGNVRE
Sbjct: 308 RLNVVTLELPPLRERREDILQLFEHFLQLSSLRFDREPPVLDRQTSSNLMSHDWPGNVRE 367

Query: 364 LRNAAERYVLLGKLAQFAESHE-PKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMER 422
           LRN AER+ L   L  F +S    +++ LG  E V  FE+SLL   L   GG++    + 
Sbjct: 368 LRNVAERFAL--GLPAFKQSGTVSENQSLGFAEAVEAFERSLLGDALQRSGGNLSQASQE 425

Query: 423 LHLPRKTLYDKMQKYQL 439
           L + + TL+DK++KY L
Sbjct: 426 LGMAKTTLFDKVKKYGL 442