Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  299 bits (765), Expect = 1e-85
 Identities = 176/470 (37%), Positives = 257/470 (54%), Gaps = 39/470 (8%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++ + A + +  FA+ E    A++    PLVIVSDI +PG  G  
Sbjct: 7   VWILDDDSSIRWVLEKALKSARITSASFAAAESLWQALELSQ-PLVIVSDIRMPGTDGLT 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +      +PVI++T H D+  AV A   GA++++ KPF  +  I  V RA     L
Sbjct: 66  LLERIGLHYPHIPVIIMTAHSDLDSAVAAYQSGAFEYLPKPFDIDEAIALVERA-----L 120

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           T  + Q  ++        P IIGE  A+Q +   I +++ +   +L+ G++GTGKELVA 
Sbjct: 121 THASEQAPQANTSEPVKAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAG 180

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S R+++ F+A+N  A+P++LIESEL+GHEKGAFTGA   R G+FE A GGTLFLD
Sbjct: 181 ALHKHSPRKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAAGVRQGRFEQANGGTLFLD 240

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q RLLRVL +    R+G +  + +D+R+IAAT  DL++   +G+FR+DL++
Sbjct: 241 EIGDMPLDVQTRLLRVLADGQFYRVGGHSPVQVDVRIIAATHQDLERLVQQGQFREDLFH 300

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + +PPLRERREDIP L  HFL  AA   G  A  L       L    WPGNVR+
Sbjct: 301 RLNVIRVHLPPLRERREDIPQLTRHFLAAAAREIGVEAKILAKETAAKLQQLPWPGNVRQ 360

Query: 364 LRNAAERYVLLGKLAQFAESHEPK---------------------------SKLLG---- 392
           L N      ++    +      P                             + LG    
Sbjct: 361 LENTCRWLTVMASGQEILPQDLPPELFKDPVVHHAGAVVAGDWESALRDIVDRRLGEGES 420

Query: 393 --LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
             L +    FE+ +LE  L    G  +    RL   R TL  K+++ ++D
Sbjct: 421 DLLADMQPTFERIMLEVALKHTQGHKQEAARRLGWGRNTLTRKLKELEMD 470