Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  290 bits (742), Expect = 6e-83
 Identities = 170/449 (37%), Positives = 254/449 (56%), Gaps = 34/449 (7%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + L++D++ +R AL  +  LA  +     S EEA+LA+K     +VI SD+ + G+ G  
Sbjct: 6   LLLVEDDASLREALLDTLMLAQFDCVALPSAEEAILALKESRFDMVI-SDVQMEGIGGMG 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +     ++P++L+T    I  AV A+  GA D++ KPF+PE L++ V R +  +  
Sbjct: 65  LLAYLRQYHPKVPLLLMTAFATIDSAVSAIKLGAVDYLAKPFSPEVLLNQVSRYMPAQ-- 122

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                        + T  P +  E +  Q L     +VA ++A +++ G +G+GKE++AR
Sbjct: 123 -------------ADTGAPVVADERS--QALLALAGRVAKSEASVMILGPSGSGKEVLAR 167

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H+QS R +  FVAINC A+PEN++E+ L+G+EKGAFTGA     GKFE AQGGTL LD
Sbjct: 168 YIHKQSLRSDGPFVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLD 227

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  M +  Q +LLRVLQER +ER+G  + I LD+RV+A +  +LK  A  G FR+DLYY
Sbjct: 228 EISEMDLGLQAKLLRVLQEREVERLGGRKTIKLDVRVLATSNRELKAMAERGDFREDLYY 287

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           R+N+  LT P L +R +DI  L  H L   A R G        +  + LL+H WPGNVRE
Sbjct: 288 RINVFPLTWPALNQRPKDILPLARHLLARHAERLGTEVPEFDEAACRRLLAHRWPGNVRE 347

Query: 364 LRNAAERYVLLGKLAQFA----------------ESHEPKSKLLGLNEQVAEFEKSLLEQ 407
           L N  +R ++L    +                  E    K++  GL +++   E  ++ +
Sbjct: 348 LDNVVQRALILSAGVKIGVQDIIIDAMDVTQITQEETAVKAEPEGLGDELKAQEHVIILE 407

Query: 408 TLIECGGSIKATMERLHLPRKTLYDKMQK 436
           TL +C GS K   ERL +  +TL  KM +
Sbjct: 408 TLSQCRGSRKLVAERLGISARTLRYKMAR 436