Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  486 bits (1251), Expect = e-142
 Identities = 252/444 (56%), Positives = 321/444 (72%), Gaps = 4/444 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  I   L Q FEL  LNA+       A+  I  +  P V+++D+ +PG+ G +
Sbjct: 11  VLIVDDEPHIGTVLMQLFELNGLNAEATTDPHLAISLID-RDWPGVVITDVNMPGMDGIS 69

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+  +  D++LPV+L+TG GDI+MAV A+  GAYDF+EKPF  E ++D V RA+EKR L
Sbjct: 70  LLAQCIRIDADLPVVLLTGFGDIAMAVSALKQGAYDFLEKPFNNEHMLDVVKRALEKRSL 129

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           TLENR+LK+ L+     GPRI+G +  I  LR+ I  V +T AD+L+ GETGTGKELVAR
Sbjct: 130 TLENRKLKKQLESHAIPGPRILGNSPGIVRLRNLIDMVVNTPADVLIEGETGTGKELVAR 189

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+ S R + NFVAINCGA+PENLIESEL+G E GAFTG D  RVGKFE A GGTLFLD
Sbjct: 190 CLHDHSPRHQANFVAINCGAIPENLIESELFGAEAGAFTGIDKARVGKFEFANGGTLFLD 249

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIES P+  Q++LLRVL++R +ER+GSN+ IPLDIRV+AATK+DLKQ   +G+FRQDL Y
Sbjct: 250 EIESTPLSLQVKLLRVLEDRKVERLGSNKSIPLDIRVVAATKVDLKQLCDKGEFRQDLLY 309

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VT+ IPPL+ERREDIP LF HF  +A+ARY K     +A     + +HDWPGNVRE
Sbjct: 310 RLNLVTIPIPPLKERREDIPLLFLHFARIASARYHKELIFPSAEHHARMTAHDWPGNVRE 369

Query: 364 LRNAAERYVLLGKLAQFAES---HEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATM 420
           LRN AERYVLLG  + FA S   H      + L+++V  FE+ L+E+ L    GSIK TM
Sbjct: 370 LRNLAERYVLLGAESAFAASLGGHAQLQSGMSLSQRVEFFERMLIEEALSHNRGSIKQTM 429

Query: 421 ERLHLPRKTLYDKMQKYQLDKESY 444
           E+L LPRKTLYDKM+KY LD++ Y
Sbjct: 430 EQLELPRKTLYDKMRKYDLDRKHY 453