Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  308 bits (789), Expect = 2e-88
 Identities = 175/441 (39%), Positives = 267/441 (60%), Gaps = 7/441 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + +++DE   R  +    +      +    VE A+++IKA   P ++ SD  L  LSG +
Sbjct: 5   ILVVEDEPGQRELIVGMLKTEGYRLREADCVEAAIVSIKAD-TPDLVFSDWKLGQLSGMD 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V  +  ++  I+ T +G I+ AV A+  GA D++ KP+  + L+  + +    + L
Sbjct: 64  LLNYVKREFPDVGFIMATAYGTITHAVDAIQAGADDYLTKPYQRQALLLAISKVARSQAL 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN+ L  +L   Q+L   ++G+   +Q + D I++++ T A +L+ GE+GTGKEL AR
Sbjct: 124 RKENKALSLALSEQQSL-VGLVGKAPCMQGVFDRISRISGTDATVLIGGESGTGKELAAR 182

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S R    F+AINCGA+PEN+ E+EL+G EKGAFTGA + ++GK E A GGT+FLD
Sbjct: 183 ALHQLSRRAHMPFIAINCGAIPENIAEAELFGAEKGAFTGATALKLGKLEAAHGGTVFLD 242

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  +P+  Q +LLR LQE  I R+G+ + + LD+RVIAAT  DL+   AE +FR+DL+Y
Sbjct: 243 EIGELPLLQQTKLLRFLQEGTITRVGAQKELQLDVRVIAATHRDLRLEVAEARFREDLFY 302

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V + +PPLRERREDI  L  HFL + A++YG     ++ + ++ LL + WPGNVRE
Sbjct: 303 RLNVVPVLMPPLRERREDIGRLVEHFLKLHASQYGFDQPKISPTALRFLLDYRWPGNVRE 362

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGL-----NEQVAEFEKSLLEQTLIECGGSIKA 418
           L N  ER+VLLG  A+  +  E  SK  GL       +   FE   L Q +    G+   
Sbjct: 363 LSNRIERFVLLGDEAELMQVSEHASKEPGLQLPDEGIEWEAFEARCLSQAMARFDGNRTK 422

Query: 419 TMERLHLPRKTLYDKMQKYQL 439
             + L +  K    +++K++L
Sbjct: 423 AAKWLGMSYKAFLYRLEKHRL 443