Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  310 bits (793), Expect = 8e-89
 Identities = 183/439 (41%), Positives = 259/439 (58%), Gaps = 9/439 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  +R  L ++        +   SVEEA          L+IV DI LPG SG  
Sbjct: 17  VLIVDDEPGMRSFLNKALSKKFALVETAGSVEEAEQLRSRCHFDLIIV-DIRLPGRSGIE 75

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
              ++  +D    +I +TG+ D+ +A++A+  GA DFI KPF  E+++  V RAIE+R L
Sbjct: 76  WHEALSDEDRRSDIIFMTGYADMEVAIQALRAGASDFIMKPFHLEQMLKAVDRAIERRLL 135

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R + +  +    IIG +AA+Q +++ IA+VA T A +L+ GE+GTGKELVAR
Sbjct: 136 KRENLMLRREVSIGYSSS--IIGNSAAMQEVKNIIARVAPTNAVVLIEGESGTGKELVAR 193

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH Q S R+  FV +NCGA+   L+ESEL+GH  G+FTGA   R G F  A GGT+FLD
Sbjct: 194 QLH-QLSGRQGPFVPVNCGAIAPELLESELFGHAAGSFTGAKGAREGLFSFASGGTIFLD 252

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP++ Q  LLRVL+++ I  +GS + + +D+RV+AAT   L      G FR+DL+Y
Sbjct: 253 EIGEMPLKMQTALLRVLEQKAIRPVGSEKEVSIDVRVVAATNRKLADEVEAGHFRRDLFY 312

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + IPPLR+R ED+  L HHF  V  A  G      +  D+  L  HDWPGN+RE
Sbjct: 313 RLNVLEIQIPPLRDRPEDVVELTHHFTRVLGAELGVRELVWSHEDLSRLQQHDWPGNIRE 372

Query: 364 LRNAAERYVLLGK-LAQF----AESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKA 418
           LRN  ER +LLGK  A++     +  EP      L   + + EK  +   +   GG+  A
Sbjct: 373 LRNMIERSILLGKPPAEYWKTTIKEVEPGQFGFPLEWPLKDVEKHHVLAVVEAHGGNKSA 432

Query: 419 TMERLHLPRKTLYDKMQKY 437
               L + RKTL  K +++
Sbjct: 433 AARDLGVSRKTLDRKFKEW 451