Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  292 bits (748), Expect = 1e-83
 Identities = 179/448 (39%), Positives = 258/448 (57%), Gaps = 21/448 (4%)

Query: 4   VFLIDDESDIRIALAQSFE---LADLNAQFFASVEEALLAIKAQGLPLVIVSDICLP--- 57
           + +++D+  ++  L  SF    L D+ A    ++E     I A+  P +++ D+ LP   
Sbjct: 8   LLIVEDDLGVQSQLKWSFSDEWLIDVAADRAKALE-----IAARTPPTIVILDLGLPPEP 62

Query: 58  GLSGQNL--LSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVH 115
             +G+ L  L  ++  +    VI+ +G+ D   A+ A+  GAYDF  KP   E L     
Sbjct: 63  NGAGEGLATLEGLISLNPLTKVIVSSGNEDHRHALSAIRLGAYDFYPKPVDIEHLRLITA 122

Query: 116 RAIEKRRLTLENRQLKRSLKVSQTLGP--RIIGETAAIQTLRDTIAQVADTQADILLFGE 173
           RA   RRL  ENRQL R+       GP   +IGE+AAIQ +   + +VA T  ++LL GE
Sbjct: 123 RAAHLRRLEEENRQLARAGHA----GPLANVIGESAAIQAVCQMVRRVASTTVNVLLLGE 178

Query: 174 TGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFE 233
           +GTGKE+ A SLH+ S R  Q FVAINC A+PENL+ESEL+GHEKGAFTGA  +  GK +
Sbjct: 179 SGTGKEVFAHSLHQLSGRAGQPFVAINCAAIPENLLESELFGHEKGAFTGALRQTTGKIQ 238

Query: 234 HAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAA 293
            A GGTLFLDEI  MP   Q +LLR LQ RVIER+G  + + +D+R+++AT  DL     
Sbjct: 239 QANGGTLFLDEIGDMPPPLQAKLLRFLQSRVIERVGGRQSLEVDVRIVSATNRDLGALIE 298

Query: 294 EGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLL 353
           +G+FR+DLYYRL+ V + +PPLR+R ED P L  +FL   AA  G+  T  ++    +L 
Sbjct: 299 KGEFREDLYYRLDEVKIALPPLRDRIEDAPLLAQYFLDSFAASMGRKVTGFSSDAQVALS 358

Query: 354 SHDWPGNVRELRNAAERYVLL--GKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIE 411
           +H WPGNVREL N  +R V+L  G+L    +       +  L E     +   +   L+ 
Sbjct: 359 AHPWPGNVRELENRVKRAVVLAEGRLVTAKDMDLVGGAMPTLRESRRRADYQAVTTALLL 418

Query: 412 CGGSIKATMERLHLPRKTLYDKMQKYQL 439
            G ++    + L + R TLYD ++ + +
Sbjct: 419 AGNNLSLAAKYLGISRPTLYDLIETHNI 446