Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  293 bits (749), Expect = 1e-83
 Identities = 177/458 (38%), Positives = 257/458 (56%), Gaps = 32/458 (6%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG--LS 60
           D+ ++DDE DIR+ LA   E    + +     +    AI  +  P V++ DI + G  L 
Sbjct: 4   DILIVDDEEDIRMMLAGILEDEGYDTRVAVDADSCFKAIDER-TPAVVILDIWMQGSRLD 62

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G  +L  +      LPV++I+GHG I  AV A+  GA+DFIEKPF  +RL+  + RAIE 
Sbjct: 63  GLQVLEELARDHPYLPVVMISGHGTIETAVSAIKQGAFDFIEKPFKADRLLLIIQRAIET 122

Query: 121 RRLTLENRQLKRSLKVSQTLGP--RIIGETAAIQTLRDTIAQVADTQADILLFGETGTGK 178
            +L LEN +L+         GP  ++IG++A I  +  TIA+VA T + +L+ G  GTGK
Sbjct: 123 AQLKLENAELR------MRAGPETQMIGDSALIGHVAQTIAKVAPTGSRVLISGPPGTGK 176

Query: 179 ELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADS-RRVGKFEHAQG 237
           E+VAR +H  S R +   V +NC A+  + +E EL G E G+  GADS R++G FE A G
Sbjct: 177 EVVARMIHAHSPRAQNRLVVVNCAAMHPDRMEIELLGAEPGSGDGADSYRKIGLFEQADG 236

Query: 238 GTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKF 297
           GTL LDE+  MP++ Q +++R+LQ++  ER+G    I +D+RVIA+T  DL Q  A G+F
Sbjct: 237 GTLLLDEVADMPLETQGKIVRILQDQSFERVGGGRRIRVDVRVIASTNRDLAQEIALGRF 296

Query: 298 RQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDW 357
           R+DLYYRLN+V + +P LRERREDI  L  HF+  AA+  G          + +L S+DW
Sbjct: 297 REDLYYRLNVVPIRLPALRERREDITPLALHFMDRAASSAGLPPRPFGEDALAALQSYDW 356

Query: 358 PGNVRELRNAAERYVLLG-----------KLAQFAESHEPKS---------KLLGLNEQV 397
           PGNVR+LRN  +  +++             L     S  P S           L L E  
Sbjct: 357 PGNVRQLRNVVDWLLIMAPGEAREAIRADMLPAEIGSVTPDSLRLDRSGEIMTLPLREAR 416

Query: 398 AEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQ 435
             FE+  L   +   GG++  T E + + R  L+ K++
Sbjct: 417 EMFERDYLIAQVTRFGGNVSKTAEFVGMERSALHRKLK 454