Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  407 bits (1046), Expect = e-118
 Identities = 215/446 (48%), Positives = 304/446 (68%), Gaps = 4/446 (0%)

Query: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLS 60
           M DV  IDD+  +R A  Q+  LA L    FA   EAL AI     P V+V+D+ +P + 
Sbjct: 1   MIDVAFIDDDDTMRAANVQALTLAGLTVAPFALPHEALAAIDG-AFPGVVVTDVRMPRID 59

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G  L   +   D +LPVILITGHGDI+MAV AM +GAYDF+ KP+A +RL+ +V  A++K
Sbjct: 60  GLELFRRLRAIDPDLPVILITGHGDIAMAVDAMREGAYDFLAKPYAADRLLTSVRHALDK 119

Query: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180
           R L LENR L+R+ + +    P ++G++ +++ LR T+ Q+AD   D+L+ GETG GK++
Sbjct: 120 RHLQLENRALRRAAEAASENLP-LLGDSPSMERLRKTLRQIADADVDVLVEGETGAGKDV 178

Query: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240
           VA +LH  S R  + FVA+NCGA+PE +IESEL+GHE GAFTGA  +RVG+ EHA GGTL
Sbjct: 179 VANALHRWSRRAARPFVAVNCGALPETVIESELFGHEAGAFTGAVKKRVGRIEHAHGGTL 238

Query: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300
           FLDEIE+M    Q++LLRVL+ R I  +G+N++ P+DIRV+AATK DL     +G FR+D
Sbjct: 239 FLDEIEAMSPGLQVKLLRVLETREIAPLGTNDIRPVDIRVVAATKTDLPTLVRQGMFRED 298

Query: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360
           LYYRL++V+L +PPLR+RR DI  LF HFL  AA ++G+A  A+  ++ + L +HDWPGN
Sbjct: 299 LYYRLHVVSLRVPPLRDRRADIVPLFAHFLDRAAKQFGRAVPAIGEAERRHLQTHDWPGN 358

Query: 361 VRELRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATM 420
           VREL + A+R V LG  +   +  +P  +   L  +V  FE + + + L    G ++A  
Sbjct: 359 VRELAHFAKR-VALG-FSDEPDQADPIGQDEPLPRRVDAFEAAQIRKALEATQGDVQAAC 416

Query: 421 ERLHLPRKTLYDKMQKYQLDKESYKP 446
           E L LPRKTLYDK++++ +D+ +Y+P
Sbjct: 417 EALGLPRKTLYDKLRRHAIDQSAYRP 442