Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  299 bits (766), Expect = 1e-85
 Identities = 181/455 (39%), Positives = 259/455 (56%), Gaps = 22/455 (4%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DD+  IR  L+       L         EA+   + Q   +V++ DI +P ++G  
Sbjct: 8   VLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRTDVVLL-DIRMPRMNGLE 66

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
              ++L  D    VIL+T   ++  AV+A+ DGA+D++ KPF  E +   V RA+E R +
Sbjct: 67  AAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRALEIRSM 126

Query: 124 TLENRQLKRSLKVSQTLGPR-IIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
             +   L+R L  S+  G   I+ +   +  LR TIA+VA +QA +L+ GE+GTGKELVA
Sbjct: 127 RADIVSLRREL--SERYGAEGILTDNPKMMDLRQTIAKVARSQATVLIQGESGTGKELVA 184

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
            S+H  S R    F+ +NC A+PE L+ESE +GHEKGAFTGA +RR G+FE A+ GTLFL
Sbjct: 185 ASVHYGSPRATGPFIRVNCAAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHGTLFL 244

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  +    Q++LLRVLQER  ER+G +E IP D+R++AAT  DL+    EG FRQDL+
Sbjct: 245 DEIGEISPALQVKLLRVLQEREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFRQDLF 304

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           +RLN+V L   PLR+R EDI  L  HFL   AA           + +  +L++ WPGNVR
Sbjct: 305 FRLNVVALKTIPLRDRPEDIRLLADHFLGRFAADNNVVIRGFDPAALDCMLAYPWPGNVR 364

Query: 363 ELRNAAERYVLL-----------------GKLAQFAESHEPKSKLL-GLNEQVAEFEKSL 404
           EL NA ER V++                 G+ A F     P  + +  L E  +EFE  +
Sbjct: 365 ELVNAVERAVVMSTGNVILRDDLPENIICGERAAFVSELLPDGEAIRPLREMASEFETRV 424

Query: 405 LEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQL 439
           +   L   GG+   T  +L + R+ L  K+Q+Y +
Sbjct: 425 IRLALARNGGNRARTAIQLGISRRALLYKLQEYAI 459