Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  308 bits (789), Expect = 2e-88
 Identities = 183/439 (41%), Positives = 255/439 (58%), Gaps = 9/439 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  +R  L ++        +   SVE+A          L+IV DI LPG SG  
Sbjct: 33  VLIVDDEPGMRSFLKKALSKKFALVETAGSVEDAEQLRSRCHFDLLIV-DIRLPGRSGIE 91

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
              ++  Q+    +I +TG+ D+ +A+KA+  GA DFI KPF  E+++  V R IE+R L
Sbjct: 92  WDEALSDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCIERRLL 151

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R + + Q+    IIG + A+  ++  I +VA T A IL+ GE+GTGKELVAR
Sbjct: 152 KRENLMLRREVSIGQS--STIIGSSDAMMEVKHVIERVAPTNAVILIEGESGTGKELVAR 209

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH  S R+   FV +NCGA+   L+ESEL+GH  G+FTGA   R G F  A GGT+FLD
Sbjct: 210 QLHLLSGRQGP-FVPVNCGAIAPELLESELFGHAAGSFTGAKGNREGLFSFASGGTIFLD 268

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP++ Q  LLRVL++R I  +GS + I +D+RV+AAT   L      G FR+DL+Y
Sbjct: 269 EIGEMPLKMQTALLRVLEQRTIRPVGSEKEINIDVRVLAATNRKLADEVEAGNFRRDLFY 328

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + IPPLRER ED+  L HHF  + AA  G      +  D+  L  H+WPGN+RE
Sbjct: 329 RLNVLDIVIPPLRERPEDVVELTHHFTRLLAAELGVKEVVWSHEDMLKLQQHEWPGNIRE 388

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLG-----LNEQVAEFEKSLLEQTLIECGGSIKA 418
           LRN  ER +LLGK        +PKS+  G     L+  + E EK  +   +    G+  A
Sbjct: 389 LRNMIERCILLGKPPAEYWKQQPKSEATGELGYPLDWSLKEVEKHHVTSVVDLHQGNKSA 448

Query: 419 TMERLHLPRKTLYDKMQKY 437
               L + RKTL  K +++
Sbjct: 449 AARDLGVSRKTLDRKYKEW 467