Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella loihica PV-4

 Score =  298 bits (763), Expect = 2e-85
 Identities = 175/471 (37%), Positives = 265/471 (56%), Gaps = 40/471 (8%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  + ++ + A ++   FA+ E    A++ Q  P VI+SDI +PG  G  
Sbjct: 5   VWVLDDDSSIRWVVERALKGAKISCASFAAAESLWQALE-QTQPQVIISDIRMPGTDGLT 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +      +PVI++T H D+  AV A   GA++++ KPF  +  I  V RA+   + 
Sbjct: 64  LLDRLQLHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAIGLVERALSHAK- 122

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                Q  + +   +   P IIGE  A+Q +   I +++ +   +L+ G++GTGKELVA 
Sbjct: 123 ----EQSPKVISQPEVKAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAG 178

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S R+++ F+A+N  A+P+ LIESEL+GHEKGAFTGA + R G+FE A GGTLFLD
Sbjct: 179 ALHKHSPRKDKPFIALNMAAIPKELIESELFGHEKGAFTGAANVRQGRFEQADGGTLFLD 238

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q RLLRVL +    RIG +  + +D+R+IAAT  +L+   A+G FR+DL++
Sbjct: 239 EIGDMPLDVQTRLLRVLADGQFYRIGGHSPVQVDVRIIAATHQNLESLVAKGDFREDLFH 298

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + +PPL +RREDIP L  HFL  AA         LT +   +L S  WPGNVR+
Sbjct: 299 RLNVIRVHLPPLSQRREDIPQLARHFLATAAKEISVEPKILTKATADTLASLPWPGNVRQ 358

Query: 364 LRNAAERYVLLG------------KLAQFAESHE--PKSKLLGLNEQVAE---------- 399
           L N     +++             +L   + SH+  P++   G  E + +          
Sbjct: 359 LENTCRWLMVMASGQEILPQDLPPELLTPSNSHDSSPQAGSGGWQEALTQWIDQRLSEGE 418

Query: 400 ----------FEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
                     FEK LLE  L    G  +   +RL   R TL  K+++ ++D
Sbjct: 419 SDLLTQIQPAFEKILLETALKHTKGHKQEAAKRLGWGRNTLTRKLKELEMD 469