Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  325 bits (834), Expect = 1e-93
 Identities = 188/444 (42%), Positives = 272/444 (61%), Gaps = 10/444 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + +++DE D R  + Q         +   SVE+A++ IKA   P ++ SD  L  L+G +
Sbjct: 8   ILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASA-PDLVFSDWKLGQLTGMD 66

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V  +  ++  I+ T +G I+ AV AM  GA D++ KP+  + L+  + +  +   L
Sbjct: 67  LLNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSIAL 126

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             +NR+L   L   Q L   ++G +A +Q +   + +V+ T A +L+ GE+GTGKEL AR
Sbjct: 127 KRQNRRLSSELSQQQEL-VGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAAR 185

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +L++ S+R  + FVAINCGA+PE+L E+EL+G EKGA+TGA+++++GK E A GGT+FLD
Sbjct: 186 ALYQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLD 245

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  +P+  Q +LLR LQE VI R+G N  I LD+RVIAAT  DL+Q  AEG+FR+DLYY
Sbjct: 246 EIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYY 305

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V + +P LRER EDI  L  HFL + A +YG     L+   ++SLL H WPGNVRE
Sbjct: 306 RLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRE 365

Query: 364 LRNAAERYVLLG----KLAQFAESHEP-KSKLLGLNEQVAE---FEKSLLEQTLIECGGS 415
           L N  ER+VLLG     + +   + +P  +K   L E   E   FEK  L Q L    G+
Sbjct: 366 LANRIERFVLLGDEEEMVQELGAAPQPLDTKRFVLPEAGIEWESFEKDCLRQALDRFEGN 425

Query: 416 IKATMERLHLPRKTLYDKMQKYQL 439
                + L L  K    +++KYQL
Sbjct: 426 RTKAAKCLGLSYKAFLYRLEKYQL 449