Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  489 bits (1260), Expect = e-143
 Identities = 254/445 (57%), Positives = 322/445 (72%), Gaps = 4/445 (0%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           D+ ++DDE  I  AL Q FEL    A      ++  L +     P +++SD+ +P + G 
Sbjct: 10  DILIVDDEPLIGSALVQLFELESYRALALTDAKQIGLGLP-DNWPGIVISDVNMPDIDGL 68

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
           +L+ ++L QD ++P+IL+TGHGDI+MAV+A+  GAYDFIEKPF  E ++D   RA+EKR 
Sbjct: 69  SLMRTLLAQDKDIPIILLTGHGDIAMAVQALKQGAYDFIEKPFNNEHMLDIAKRALEKRA 128

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           LTLENR LKR L+   T GPRI+G +  I+ +R  I QV D  AD+L+ GETGTGKELVA
Sbjct: 129 LTLENRSLKRELESQSTPGPRILGHSPGIKQMRHIIHQVIDMPADVLIEGETGTGKELVA 188

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R LH+ S R E NFVAINCGA+PE +IESEL+G E GAFTGAD  R+GKFE+A GGTLFL
Sbjct: 189 RYLHDHSPRAEANFVAINCGAIPETIIESELFGAESGAFTGADKTRIGKFEYANGGTLFL 248

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEIES P+  Q++LLRVL++R +ER+GSN+ I LDIR+IAATK+DLK     G+FRQDL 
Sbjct: 249 DEIESTPLSLQVKLLRVLEDRKVERLGSNKSIDLDIRIIAATKVDLKSLCDTGEFRQDLL 308

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRLN+VT+ IP LRERREDI  LF HF  VA+ARY KA   LTA     L+SHDWPGNVR
Sbjct: 309 YRLNLVTVPIPALRERREDIGLLFLHFARVASARYHKALIPLTAEYTAQLVSHDWPGNVR 368

Query: 363 ELRNAAERYVLLGKLAQFAESHEPKSKL---LGLNEQVAEFEKSLLEQTLIECGGSIKAT 419
           ELRN AERYVLLG  A FA S    S+L   + L ++V  FE+ L+E+ L    GSIK T
Sbjct: 369 ELRNLAERYVLLGPEAAFATSLGQSSQLNANMSLQQRVEFFERLLIEEALSNNKGSIKLT 428

Query: 420 MERLHLPRKTLYDKMQKYQLDKESY 444
           ME+L LPRKTLYDKMQK+ L+++++
Sbjct: 429 MEQLELPRKTLYDKMQKFGLNRKTF 453