Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  421 bits (1082), Expect = e-122
 Identities = 221/443 (49%), Positives = 301/443 (67%), Gaps = 5/443 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           VFL++D+  +R+  AQ+  LA L  + FA  E AL A+ A+ LP  +VSD+ LPG  G  
Sbjct: 9   VFLVEDDPAVRMGSAQALTLAGLEVRSFADAEGALAALAAE-LPGAVVSDVRLPGRDGIA 67

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +   D ELPVIL+TGHGD++MAV+AM DGA+DFIEKPF  E L+    +A+EKR L
Sbjct: 68  LLGELRQLDRELPVILVTGHGDVAMAVQAMRDGAHDFIEKPFTSEHLVRVTRQALEKRAL 127

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+LK +L      G  +IG+T A+Q +R  +A +A T  DIL+ GETG+GKE+VAR
Sbjct: 128 LLENRRLKEALPTQD--GLPVIGQTPAMQEVRRLVAALAPTDVDILINGETGSGKEVVAR 185

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           ++H  S RR   FVAINC A+PE++ ESE++GHE GAFTGA  RR+GK E+A GGTLFLD
Sbjct: 186 AIHSASGRRGP-FVAINCAALPESVFESEMFGHEAGAFTGAGKRRIGKIEYAHGGTLFLD 244

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMP+  Q++LLR LQER IER+G N  + +D RV+AA+K DLK  +  G+FR DLYY
Sbjct: 245 EIESMPLNLQVKLLRALQERSIERLGGNAPVAVDCRVVAASKADLKALSEAGQFRADLYY 304

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V++ +PPLR R+EDIP L  HFL  AA R+G+   A   +++    +  WPGNVRE
Sbjct: 305 RLNVVSIDLPPLRRRQEDIPLLMGHFLQQAAKRFGREVPAWGPAELARWQAQPWPGNVRE 364

Query: 364 LRNAAERYVL-LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMER 422
           L+NAAER+ L L +    + +       L L  ++   E+  +E  L  C G++    ER
Sbjct: 365 LKNAAERFCLGLDQPQAASPAGSAPGAELPLARRLELAEQGFIEAALAACHGNVALAAER 424

Query: 423 LHLPRKTLYDKMQKYQLDKESYK 445
           L LP+KTLYDK+ + Q+  ++++
Sbjct: 425 LQLPKKTLYDKLARLQIAADTFR 447