Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  315 bits (806), Expect = 3e-90
 Identities = 182/439 (41%), Positives = 259/439 (58%), Gaps = 8/439 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  +R  L ++  L     +  AS EE    +  +   L+I+ DI LPG SG  
Sbjct: 24  VLVVDDEEGMRSFLTRTLALRGWQVEAAASAEEGAAQLAGRHFDLIIL-DIALPGKSGLE 82

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +        VILIT   D+  A+ A+  GA DF+ KPF  ++++++++R  E+ RL
Sbjct: 83  WLKDLKAAGFAGDVILITAFADMETAIDALRAGASDFVLKPFRVDQIVNSINRCFERARL 142

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R L+        I+G + +I  LR  + +VA T + +L+ GE+G GKELVAR
Sbjct: 143 ARENFVLRRQLEERGGARDEIVGHSDSIARLRALVRRVAPTPSTVLIQGESGVGKELVAR 202

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S R  + FVA+NC A+  +LIESEL+GH KGAFTGA   R G F +A GGTLFLD
Sbjct: 203 ALHQLSPRASRPFVAVNCAAISADLIESELFGHVKGAFTGAKEARNGLFYYAHGGTLFLD 262

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI   P+  Q +LLRVL+ER I  +G+   +P+D+RV+AAT  DLKQ AA+ +FRQDL+Y
Sbjct: 263 EIGEFPLALQSKLLRVLEERRIRPVGTEHEVPVDVRVVAATNRDLKQEAAQCRFRQDLFY 322

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL ++TLT+PPLR+R ED+P L   F+     + G A   +T     +L ++ WPGNVRE
Sbjct: 323 RLEVMTLTVPPLRQRAEDVPELAALFMDNLCVQLGVAPLLITPEVAHALSAYTWPGNVRE 382

Query: 364 LRNAAERYVLLGK-----LAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKA 418
           LRN  ER +L G+     L     + EP +    L   +AE EK  +   L +  GS   
Sbjct: 383 LRNFVERSLLFGEFPLDSLGSDGAAMEPAAAPPSL--LLAEVEKRHILAVLAQSNGSKAR 440

Query: 419 TMERLHLPRKTLYDKMQKY 437
             + L + RKTL  K  ++
Sbjct: 441 AADLLGVSRKTLDRKCAEW 459