Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  298 bits (763), Expect = 3e-85
 Identities = 180/479 (37%), Positives = 265/479 (55%), Gaps = 60/479 (12%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + +++D+ ++R A+  + ELA       AS  EAL  + A+    ++VSD+ +  + G  
Sbjct: 7   ILVVEDDPNLREAVVDTLELAGEAVLSAASGPEALKVL-AERPVAIVVSDVRMEPMDGIT 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  Q   LPV+L+T   D+  AV+AM  GA DF+ KPF P+ L++ V R     RL
Sbjct: 66  LLKEIRGQYPHLPVVLMTAFADVDRAVEAMRAGACDFLLKPFEPKALLEHVARY----RL 121

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                               ++   AA + L    A+VA T A +LL GE+G GKE+VAR
Sbjct: 122 PAMGEDSD------------VVAVDAASRNLFSLAARVAQTDATVLLTGESGVGKEVVAR 169

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H  S+RR+  FVAINC A+PE+L+E+ L+G+EKGAFTGA+  + GKFE AQ GTL LD
Sbjct: 170 YIHNHSARRKGPFVAINCAAIPESLLEATLFGYEKGAFTGANQAQAGKFEQAQNGTLLLD 229

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+  MP+  Q +LLRVLQER +ER+G  + + LDIRV+A +  D+ +A A+G FR+DLYY
Sbjct: 230 EVTEMPLALQAKLLRVLQEREVERVGGKQPVRLDIRVVATSNRDMAEAVAKGIFREDLYY 289

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L IP LR+R +D+  L  HFL     + G+    LT +  Q+L  H WPGNVRE
Sbjct: 290 RLNVFPLLIPALRQRPDDVVPLARHFLADQGGKSGRPGLLLTPAAEQALRVHSWPGNVRE 349

Query: 364 LRNAAERYVLL-----------------GKLAQFAESHEPKSKLLGLNEQVA-------- 398
           L N  +R ++L                 G  A  A ++ P   ++    Q+A        
Sbjct: 350 LVNVMQRALILAPGDQVDAAHLHLVARPGAPAAAAPAYVPPPPVMMEVPQLAPQAPQAIS 409

Query: 399 ------------------EFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQL 439
                             ++E+ L+ +TL   GGS K  +E+L +  +TL  K+++Y+L
Sbjct: 410 VEEDGALQSGGKKADSIKDWERELILETLASVGGSRKLAVEKLGISERTLRHKLRQYRL 468