Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  289 bits (740), Expect = 1e-82
 Identities = 174/473 (36%), Positives = 254/473 (53%), Gaps = 37/473 (7%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + ++DD++  R  L           +     E A+  ++ +    V++ D+ +  + G  
Sbjct: 6   ILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLM-DVRMARMDGIA 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +L  +   PV+++T    +  AV+A+  GAYD++ KP   + L  T+ RA++  RL
Sbjct: 65  ALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRL 124

Query: 124 TLENRQLKRSLKVSQTLGPR-----IIGETAAIQTLRDTIAQVADTQADILLFGETGTGK 178
             ENR+L+  L      G       IIG +A +  L + IA VA ++A +L+ GE+GTGK
Sbjct: 125 ASENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGTGK 184

Query: 179 ELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGG 238
           ELVAR+LH  S R  +  V +NC A+ E L+ESEL+GHE+GAFTGAD RR G+F  A GG
Sbjct: 185 ELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQADGG 244

Query: 239 TLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFR 298
           TLFLDEI  MP+  Q +LLR LQ+  ++R+GS+  + +D+RVIAAT  DL++ AA G+FR
Sbjct: 245 TLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFR 304

Query: 299 QDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWP 358
           +DLYYRLN++ + +P LRER  D+P L   FL     +  K     T   +  LL HDWP
Sbjct: 305 EDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWP 364

Query: 359 GNVRELRNAAERYVLLGKLAQFAESHEP------------KSKLLGLNE----------- 395
           GNVREL NA ER V+L       E   P                 G  E           
Sbjct: 365 GNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAPADGD 424

Query: 396 --------QVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
                    + + E+  +  TL E   +      RL + R TL++K++KY L+
Sbjct: 425 GLAPYAGLSLEDLERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYDLE 477