Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  291 bits (746), Expect = 3e-83
 Identities = 161/371 (43%), Positives = 229/371 (61%), Gaps = 2/371 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + ++DDE+  R  LA +           A+  EAL  +      LV+ +D+ + G+ G +
Sbjct: 39  ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVL-TDLMMQGMDGLD 97

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL +V  +  +  V+++TG+  +  AV+AMH GAY ++ KP+        V +A+EKRRL
Sbjct: 98  LLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRRL 157

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E  +L+  L+  ++L   ++G    +Q L+ TIAQVA +   +L+ GETGTGKEL AR
Sbjct: 158 RQEVARLREQLR-ERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAAR 216

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H  S R E  F+AINCGA  E L+ESEL+GHE+GAF+GA  +R G FE A+GGTLFLD
Sbjct: 217 MVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLD 276

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+  M +  Q++LLR +QER I R+G    IP+D+R++AAT  DL   AA G+FR DLYY
Sbjct: 277 EVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYY 336

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V L +PPL ER ED+P L  +F   AA   G+ A  +    +  L  + +PGNVRE
Sbjct: 337 RLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRE 396

Query: 364 LRNAAERYVLL 374
           L N  ER  +L
Sbjct: 397 LHNIIERAAVL 407