Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  294 bits (752), Expect = 5e-84
 Identities = 179/461 (38%), Positives = 261/461 (56%), Gaps = 22/461 (4%)

Query: 4   VFLIDDESDIRIALAQ--SFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSG 61
           V ++DDE    + LA+  S +  D       S EEAL A+   G   V+++D+ +PGLSG
Sbjct: 12  VLVVDDERVFAVGLARLLSTQFPDWTFDVRCSGEEALSAL-VHGDYAVLITDLRMPGLSG 70

Query: 62  QNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKR 121
           Q L+   L QD  L VI++T  G +  AV A+  GAYDF+ KP   E L   V +A+E+ 
Sbjct: 71  QTLMREALAQDPALTVIMLTAFGSVETAVAALKQGAYDFLTKPIDQEHLFRVVGKAMERG 130

Query: 122 RLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181
            L  EN +L++       LGP +IG++ A+Q LR +IA VA +   +L+ GE+GTGKELV
Sbjct: 131 VLLRENGRLRQKA-ADGDLGPMLIGKSPAMQRLRKSIAAVAASDYTVLIRGESGTGKELV 189

Query: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241
           AR++   S R +  F+ +NC A+P+ L+ESEL+GH KGAFTGAD  R G F  A  GT+ 
Sbjct: 190 ARAVQSLSQRADGPFIMVNCPAIPDALLESELFGHVKGAFTGADRNRKGLFMAADKGTIL 249

Query: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301
           LDEI  +P   Q +LLRV+QE  +  +G+NE   +++R++A+T  +L+   A+G FR+DL
Sbjct: 250 LDEIGDIPASVQSKLLRVIQEGEVRPVGTNEAQRVNVRIVASTNRNLEAKIADGSFREDL 309

Query: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361
           Y+RLN++T+ +PPLRER EDIP +  HFL       G      +   +  L    WPGNV
Sbjct: 310 YFRLNVLTINVPPLRERIEDIPHIASHFLFRVCNELGVPEKEFSNEALSYLSCRPWPGNV 369

Query: 362 RELRNAAERYVLL--GKLAQFAESH--------EPKSKLLGLN-----EQVA--EFEKSL 404
           REL N   R  +   G+  + A  H        EP+    G +     +QVA  EF +S 
Sbjct: 370 RELLNLVRRMAVFCPGERIEGAFIHRMEHGADTEPECG-AGFSPYKDAKQVAVDEFTRSY 428

Query: 405 LEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKESYK 445
           + + L    G+I        + R TL   +++  +D   Y+
Sbjct: 429 VHRLLEHTHGNISEAARLSGVERFTLQKILKRMHIDTADYR 469