Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  290 bits (742), Expect = 7e-83
 Identities = 158/386 (40%), Positives = 239/386 (61%), Gaps = 18/386 (4%)

Query: 1   MCDVFLIDDESDIRIALAQSF--ELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG 58
           M  + ++DDE  +R +  +    E  D+ A   AS  E  + +  + LP +++ D+ +PG
Sbjct: 1   MAKILIVDDELQLRQSFQRLLAGEGHDVRA---ASTGEQGIKLVREELPELVIMDVRMPG 57

Query: 59  LSGQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAI 118
           + G   L ++   D+ LPV+++T +     A++A   GA+D+I KPF    ++  + +A+
Sbjct: 58  MDGLTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAV 117

Query: 119 EKRRLTLENRQLKRSLKVS--------QTLGPRIIGETAAIQTLRDTIAQVADTQADILL 170
           E  R     R   R   V+        +TLG  ++G + A+  +   I + A T A +L+
Sbjct: 118 EAGR-----RMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLV 172

Query: 171 FGETGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVG 230
            GE+GTGKELVAR++++ S R E+ F+ INC A+P+ L+ESEL+G+EKGAFTGA +RRVG
Sbjct: 173 RGESGTGKELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVG 232

Query: 231 KFEHAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQ 290
           K E A GGT+FLDEI  MP+  Q +LLR+LQE+ IER+G  + IP+D+R+IAAT  DL+ 
Sbjct: 233 KIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEA 292

Query: 291 AAAEGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQ 350
           A A+G+FR+DLYYRL +VTL +PPLRER EDIP L  +FL   +         +T   + 
Sbjct: 293 AVADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALA 352

Query: 351 SLLSHDWPGNVRELRNAAERYVLLGK 376
            L +  WPGNVREL N+  + ++  +
Sbjct: 353 YLEAQPWPGNVRELGNSVHKALVFSR 378