Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  307 bits (786), Expect = 5e-88
 Identities = 167/406 (41%), Positives = 247/406 (60%), Gaps = 14/406 (3%)

Query: 49  VIVSDICLPGLSGQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPE 108
           +I+ D+ +  +SG   L  +   +  +P++++T + ++  AV A+  GAYD++ KP   E
Sbjct: 53  LILMDLRMGVMSGIGALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFE 112

Query: 109 RLIDTVHRAIEKRRLTLENRQLKRSLKVSQTLGPR-IIGETAAIQTLRDTIAQVADTQAD 167
            L  T+ RA++   L  EN  LK +L  + +  P  IIG++ ++  L D +A +A ++A 
Sbjct: 113 ELRLTLERALDHAALRDENAALKTTL--ASSFDPAGIIGQSQSMHRLMDMMASIAPSEAT 170

Query: 168 ILLFGETGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSR 227
           +L+ GE+GTGKEL+AR++H  S RR   +V +NC A+ E L+ESEL+GHEKGAFTGA+ R
Sbjct: 171 VLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKR 230

Query: 228 RVGKFEHAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKID 287
           R G+F+ A  GT+FLDEI    +  Q +LLR +QER I+R+GS++ + +D+R+IAAT  D
Sbjct: 231 REGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRD 290

Query: 288 LKQAAAEGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTAS 347
           L+     G+FRQDLYYRLN+VTL +PPLRER EDIP L  HFL     + GK     T  
Sbjct: 291 LRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQ 350

Query: 348 DVQSLLSHDWPGNVRELRNAAERYVLLGKLAQFAESHEPKSKLLGLNE-----------Q 396
            +  LL HDWPGNVREL NAAER V+L      +E   P +   G  +            
Sbjct: 351 AMDRLLKHDWPGNVRELENAAERAVVLLVGEYISERELPHAIAGGDGDATCAVPRFNGMT 410

Query: 397 VAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKE 442
           + E E++ +   +    G+      RL + RKTL+ K+ +Y  D++
Sbjct: 411 LEEIERAAILDAMDASEGNKSEAARRLGITRKTLHAKLNRYADDEQ 456