Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  446 bits (1147), Expect = e-130
 Identities = 234/445 (52%), Positives = 304/445 (68%), Gaps = 4/445 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V  +DD+  IR A+AQ+  L +L    F     AL  I A     V++ D  +P ++G  
Sbjct: 6   VIFVDDDPHIRQAIAQTLTLEELPVSCFEDAPSALGHINAD-YDGVVLCDYNMPEMNGLE 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           +L  +   D  +PVI++TG GDIS AV AM  GAYDFIEKPF  + LI+ +  A+EKR L
Sbjct: 65  MLDRLRAIDDTIPVIILTGQGDISTAVTAMQQGAYDFIEKPFDHDELIELLRHALEKRHL 124

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+LK  L+     GPR++G++  +Q +  TI  + D  A+ILL GETG+GK+ +AR
Sbjct: 125 ALENRRLKAQLRHLARPGPRMLGDSPLMQKVMATIDPILDISANILLHGETGSGKDALAR 184

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +HE S R   NFVAINCGAVPENLIESEL+GHE GAFTGA+ RR+GK EHA  GTLFLD
Sbjct: 185 YIHENSGRSAHNFVAINCGAVPENLIESELFGHEAGAFTGAEKRRIGKIEHAHKGTLFLD 244

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+ESMPM  Q++LLRVL+E+ +ER+GSN++  +D+R+IAATK DLK+ + +G+FR DLYY
Sbjct: 245 EVESMPMPLQVKLLRVLEEQRVERLGSNKVQEVDVRIIAATKADLKKLSDDGEFRPDLYY 304

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V + IPPLRER+EDIP LFHHF+L+AAARY + +  L A     L+ H WPGNVRE
Sbjct: 305 RLNVVKVDIPPLRERKEDIPLLFHHFVLIAAARYDRESIPLDAGQAARLMQHSWPGNVRE 364

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLG---LNEQVAEFEKSLLEQTLIECGGSIKATM 420
           LRN AERYVLLG  A         + + G   L E +  FE+S +   L    GSIK TM
Sbjct: 365 LRNLAERYVLLGPAALDENEPADTANVAGRQTLAEMMDGFERSAIISALNASHGSIKDTM 424

Query: 421 ERLHLPRKTLYDKMQKYQLDKESYK 445
            +L + RKTLYDKM+K+ LDK  +K
Sbjct: 425 VQLGIARKTLYDKMRKHGLDKAQFK 449