Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., two-component response regulator NtrC from Marinobacter adhaerens HP15

 Score =  285 bits (729), Expect = 2e-81
 Identities = 171/472 (36%), Positives = 250/472 (52%), Gaps = 33/472 (6%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           +V++IDD+  IR  L ++   A +  + F S E  ++ ++ +  P  IVSDI +PG+ G 
Sbjct: 6   NVWIIDDDRSIRWVLERALNQAGMQPRVFDSGESIMMRLEHEQ-PDAIVSDIRMPGVDGI 64

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
            LLS ++    ++PVI++T H D+  AV +   GA++++ KPF  +  +  V RA+    
Sbjct: 65  TLLSQIVDVHPDVPVIIMTAHSDLESAVTSYQTGAFEYLPKPFDVDDAVALVKRAVAHSH 124

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
              E R               IIGE  A+Q +   I +++ +   +L+ GE+GTGKELVA
Sbjct: 125 ---EKRASGEPQAEMAQRNAEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVA 181

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           ++LH  S R    F+A+N  A+P++LIESEL+GHEKGAFTGA + R G+FE A GGTLFL
Sbjct: 182 QALHNHSPRANHPFIALNMAAIPKDLIESELFGHEKGAFTGAGAARQGRFEQANGGTLFL 241

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  MP   Q RLLRVL +    R+G    I +D+R+IAAT  DL++    G FR+DL+
Sbjct: 242 DEIGDMPADTQTRLLRVLADGEFYRVGGTTPIKVDVRIIAATHQDLEKLVQAGTFREDLF 301

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           +RLN++ + +P L ERREDIP L  HFL  AA         L     + L +  WPGNVR
Sbjct: 302 HRLNVIRVHLPKLAERREDIPRLMQHFLKRAAKELAVEPKILREEAEEYLTTLPWPGNVR 361

Query: 363 ELRNAAERYVLLGK-----------------------------LAQFAESHEPKSKLLGL 393
           +L N      ++                               L  +AE    + K   L
Sbjct: 362 QLENTCRWLTVMASGREIHIDDLPPELLHQAETPTTGTTWQEGLKNWAEQELKRGKKGIL 421

Query: 394 NEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKESYK 445
           +  V EFEK ++E  L   GG  +     L   R TL  K+ +  +D   ++
Sbjct: 422 DTAVPEFEKIMIETALKHTGGRRRDASILLGWGRNTLTRKINELGMDHPEHE 473