Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., sigma-54 dependent response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  299 bits (766), Expect = 1e-85
 Identities = 178/439 (40%), Positives = 253/439 (57%), Gaps = 9/439 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  +R  L ++        +   S+E+A          L+IV DI LPG SG  
Sbjct: 17  VLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLIV-DIRLPGRSGIE 75

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
              ++  Q     VI +TG+ D+ +A+KA+  GA DFI KPF  E+++  V R IE+R L
Sbjct: 76  WSEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMSAVDRCIERRLL 135

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R + +  +    IIG + A+++++  I +VA T A +L+ GE+GTGKELVAR
Sbjct: 136 RRENLMLRREVSIGYS--STIIGSSDAMKSVKQVIERVAPTNAVVLIQGESGTGKELVAR 193

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH  S R+   FV +NCG++   L+ESEL+GH  GAFTGA   R G F  A GGT+FLD
Sbjct: 194 QLHLLSGRQGP-FVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGLFSFASGGTIFLD 252

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP++ Q  LLRVL+++ I  +GS + + +D+RVIAAT   L      G FR+DLYY
Sbjct: 253 EIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVEAGNFRRDLYY 312

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + IPPLR+R ED+  L HHF    AA  G      +  D+  L  H+WPGN+RE
Sbjct: 313 RLNVLDILIPPLRDRPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQHEWPGNIRE 372

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLG-----LNEQVAEFEKSLLEQTLIECGGSIKA 418
           LRN  ER +LLGK        + K++ L      L+  + E EK  +   +    G+  A
Sbjct: 373 LRNMIERCILLGKPPAEYWKQQVKTESLASQGYPLDWPLKEVEKHHVTSVVDLHSGNKSA 432

Query: 419 TMERLHLPRKTLYDKMQKY 437
               L + RKTL  K +++
Sbjct: 433 AARDLGVSRKTLDRKYKEW 451